Variant report

Variant	rs924937
Chromosome Location	chr4:76769442-76769443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:76498357..76499621-chr4:76769117..76770116,10	K562	blood:
2	chr4:76497998..76498857-chr4:76769092..76770235,3	MCF-7	breast:
3	chr4:76741166..76744063-chr4:76769113..76771616,2	MCF-7	breast:
4	chr4:76497545..76500510-chr4:76767738..76769614,2	MCF-7	breast:
5	chr4:76498264..76499501-chr4:76769042..76769962,9	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10856860	0.83[ASN][1000 genomes]
rs13434876	0.84[ASN][1000 genomes]
rs1876099	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2062958	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28501590	0.84[ASN][1000 genomes]
rs4412019	0.86[GIH][hapmap];0.81[ASN][1000 genomes]
rs57961226	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6531959	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832374	0.84[ASN][1000 genomes]
rs6837321	0.81[ASN][1000 genomes]
rs7340822	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7340823	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7682494	0.84[ASN][1000 genomes]
rs7692052	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7696758	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv964255	chr4:76761215-76773429	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76763200-76770600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:76763400-76769600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:76763400-76770600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:76763400-76773600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:76763600-76770600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:76765200-76770200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:76766000-76770200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:76766000-76770600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:76768600-76769600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr4:76768600-76769600	Enhancers	HSMMtube	muscle
11	chr4:76768600-76770800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:76768600-76770800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:76768600-76770800	Enhancers	NH-A	brain
14	chr4:76768600-76771000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:76768600-76771000	Enhancers	A549	lung
16	chr4:76768600-76771000	Enhancers	Osteobl	bone
17	chr4:76768800-76771000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:76769000-76769600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr4:76769000-76769600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:76769000-76769600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:76769000-76769600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr4:76769000-76769600	Enhancers	Fetal Heart	heart
23	chr4:76769000-76769600	Enhancers	Left Ventricle	heart
24	chr4:76769000-76769600	Enhancers	Right Atrium	heart
25	chr4:76769000-76769600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr4:76769000-76769600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr4:76769000-76769800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr4:76769000-76770400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr4:76769200-76769600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:76769200-76769600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:76769200-76769600	Enhancers	Brain Cingulate Gyrus	brain
32	chr4:76769200-76769600	Enhancers	Fetal Intestine Small	intestine
33	chr4:76769200-76769600	Enhancers	Lung	lung
34	chr4:76769200-76769600	Enhancers	Ovary	ovary
35	chr4:76769200-76769600	Enhancers	Pancreas	Pancrea
36	chr4:76769200-76769600	Enhancers	Rectal Smooth Muscle	rectum
37	chr4:76769200-76769600	Enhancers	Hela-S3	cervix
38	chr4:76769200-76769600	Enhancers	HMEC	breast
39	chr4:76769200-76769600	Enhancers	K562	blood
40	chr4:76769200-76769600	Enhancers	NHDF-Ad	bronchial
41	chr4:76769200-76769600	Enhancers	NHLF	lung
42	chr4:76769200-76769800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr4:76769200-76770000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:76769200-76770000	Enhancers	Fetal Muscle Trunk	muscle
45	chr4:76769200-76770000	Enhancers	Placenta	Placenta
46	chr4:76769200-76770200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:76769200-76770800	Flanking Active TSS	HepG2	liver
48	chr4:76769200-76771200	Enhancers	HUVEC	blood vessel
49	chr4:76769400-76770000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:76769400-76770600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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