Variant report

Variant	rs28501590
Chromosome Location	chr4:76764004-76764005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76746532..76748297-chr4:76763794..76766234,2	MCF-7	breast:
2	chr4:76760282..76762958-chr4:76763569..76766222,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10856860	0.98[ASN][1000 genomes]
rs13434876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876099	0.92[ASN][1000 genomes]
rs4412019	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57961226	0.87[ASN][1000 genomes]
rs6531959	0.84[ASN][1000 genomes]
rs6531960	0.84[ASN][1000 genomes]
rs6832374	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837321	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7340822	0.98[ASN][1000 genomes]
rs7340823	0.98[ASN][1000 genomes]
rs7682494	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692052	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7696758	0.97[ASN][1000 genomes]
rs924937	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv964255	chr4:76761215-76773429	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76743800-76764800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:76756400-76764800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:76763200-76764800	Weak transcription	NH-A	brain
4	chr4:76763200-76764800	Weak transcription	Osteobl	bone
5	chr4:76763200-76765000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:76763200-76765000	Weak transcription	Brain Anterior Caudate	brain
7	chr4:76763200-76765600	Weak transcription	Right Atrium	heart
8	chr4:76763200-76769000	Weak transcription	Left Ventricle	heart
9	chr4:76763200-76770600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:76763400-76764600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:76763400-76765000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:76763400-76765200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:76763400-76765400	Weak transcription	Placenta	Placenta
14	chr4:76763400-76765600	Enhancers	HepG2	liver
15	chr4:76763400-76769000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:76763400-76769000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:76763400-76769200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:76763400-76769600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:76763400-76770600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:76763400-76773600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:76763600-76764600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:76763600-76764800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:76763600-76764800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:76763600-76765000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:76763600-76765200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:76763600-76765200	Enhancers	A549	lung
27	chr4:76763600-76765400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr4:76763600-76765600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr4:76763600-76768600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr4:76763600-76769000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr4:76763600-76769000	Weak transcription	Fetal Heart	heart
32	chr4:76763600-76769000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:76763600-76769200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr4:76763600-76769200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:76763600-76770600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr4:76763800-76765000	Weak transcription	HSMMtube	muscle
37	chr4:76763800-76765400	Weak transcription	K562	blood

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