Variant report

Variant	rs13475
Chromosome Location	chr7:96810729-96810730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96801538..96803188-chr7:96810156..96813004,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1014341	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10229181	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10231916	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[ASN][1000 genomes]
rs10233801	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10235199	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10252102	0.80[ASN][1000 genomes]
rs10260298	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10274547	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10275135	0.81[ASN][1000 genomes]
rs10281783	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11972232	0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1199289	0.96[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1199290	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1199291	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1199292	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12056091	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs12669915	0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12671362	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534370	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1880732	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1917941	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2140954	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs2693313	0.96[CEU][hapmap]
rs28646010	0.80[ASN][1000 genomes]
rs28825121	0.81[ASN][1000 genomes]
rs62499473	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6465571	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6943457	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6961807	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6963921	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6973369	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[ASN][1000 genomes]
rs7787376	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7794886	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs7803945	0.93[CEU][hapmap];0.80[ASN][1000 genomes]
rs7810432	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7811797	0.81[ASN][1000 genomes]
rs9656043	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96769000-96811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:96771400-96818200	Weak transcription	A549	lung
3	chr7:96789400-96812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:96789400-96815400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:96789400-96818000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:96789600-96818400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:96790400-96814600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:96790600-96811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:96790600-96811600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:96790600-96813600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:96790600-96813600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:96791800-96811600	Weak transcription	Adipose Nuclei	Adipose
13	chr7:96796000-96811800	Weak transcription	K562	blood
14	chr7:96797400-96811200	Weak transcription	HepG2	liver
15	chr7:96797400-96814200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:96797400-96814800	Weak transcription	Pancreas	Pancrea
17	chr7:96797400-96816400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:96797400-96816600	Weak transcription	Aorta	Aorta
19	chr7:96797600-96810800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:96797600-96811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:96797600-96811800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:96797600-96818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:96797800-96816000	Weak transcription	Primary B cells from cord blood	blood
24	chr7:96798000-96811800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:96799200-96812200	Weak transcription	GM12878-XiMat	blood
26	chr7:96800800-96812600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:96801200-96811800	Weak transcription	Ovary	ovary
28	chr7:96801200-96815400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:96803000-96818400	Weak transcription	Psoas Muscle	Psoas
30	chr7:96803200-96813400	Weak transcription	Hela-S3	cervix
31	chr7:96804000-96817200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:96804200-96816000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr7:96804200-96816200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:96805000-96814200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:96805400-96819000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:96805600-96812000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr7:96805800-96813600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr7:96806200-96811800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr7:96806200-96812000	Weak transcription	Left Ventricle	heart
40	chr7:96808200-96811600	Weak transcription	Primary T cells from cord blood	blood
41	chr7:96808800-96811400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:96808800-96813600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr7:96809000-96811400	Weak transcription	Liver	Liver
44	chr7:96809000-96813200	Weak transcription	Brain Substantia Nigra	brain
45	chr7:96809200-96811800	Weak transcription	Dnd41	blood
46	chr7:96809200-96812800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:96809400-96817400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr7:96809600-96811400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:96810000-96811800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:96810000-96818000	Weak transcription	Fetal Muscle Trunk	muscle

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