Variant report

Variant	rs7787376
Chromosome Location	chr7:96746074-96746075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:96746067-96748250	K562	blood:	n/a	n/a
2	SPI1	chr7:96745541-96746181	HL-60	blood:	n/a	n/a
3	MYC	chr7:96745660-96748098	NB4	blood:	n/a	n/a
4	POLR2A	chr7:96745327-96748092	GM12891	blood:	n/a	n/a
5	SRF	chr7:96745624-96746110	ECC-1	luminal epithelium:	n/a	n/a
6	POLR2A	chr7:96745531-96747897	GM12878	blood:	n/a	n/a
7	MXI1	chr7:96745603-96748940	SK-N-SH	brain:	n/a	n/a
8	CBX3	chr7:96746028-96747346	K562	blood:	n/a	n/a
9	POLR2A	chr7:96745586-96747560	Raji	blood:	n/a	n/a
10	TBL1XR1	chr7:96745993-96747227	K562	blood:	n/a	n/a
11	POLR2A	chr7:96745960-96749298	K562	blood:	n/a	n/a
12	SRF	chr7:96745668-96746089	ECC-1	luminal epithelium:	n/a	n/a
13	POLR2A	chr7:96745530-96748192	NB4	blood:	n/a	n/a
14	IRF1	chr7:96745792-96746123	K562	blood:	n/a	n/a
15	NRF1	chr7:96745844-96747868	SK-N-SH	brain:	n/a	chr7:96747001-96747012 chr7:96746801-96746812 chr7:96746998-96747012 chr7:96747001-96747010 chr7:96746801-96746815
16	POLR2A	chr7:96746058-96748307	K562	blood:	n/a	n/a
17	POLR2A	chr7:96746071-96746271	MCF10A-Er-Src	breast:	n/a	n/a
18	MAX	chr7:96745591-96748170	NB4	blood:	n/a	n/a

Variant related genes	Relation type
ACN9	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1014341	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.81[ASN][1000 genomes]
rs10229181	0.87[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs10231916	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10235199	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[ASN][1000 genomes]
rs10246622	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10252102	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10260298	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.80[ASN][1000 genomes]
rs10275135	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10279603	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11972232	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1199289	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[ASN][1000 genomes]
rs1199290	0.81[ASN][1000 genomes]
rs1199291	0.80[ASN][1000 genomes]
rs1199292	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[MKK][hapmap];0.90[TSI][hapmap];0.81[ASN][1000 genomes]
rs12056091	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12669915	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12670377	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs12671685	0.87[YRI][hapmap]
rs13475	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1534370	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap]
rs1880732	0.82[ASN][1000 genomes]
rs1917941	0.83[ASN][1000 genomes]
rs2140954	0.81[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2693313	0.88[CEU][hapmap]
rs28646010	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28825121	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4729330	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6465571	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap]
rs6958059	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6961807	0.82[ASN][1000 genomes]
rs6963921	0.85[ASN][1000 genomes]
rs6973369	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73233819	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7794886	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7803945	0.92[CEU][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7810432	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.81[ASN][1000 genomes]
rs7811797	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7787376	ZNF655	cis	parietal	SCAN
rs7787376	ACN9	cis	lymphoblastoid	seeQTL
rs7787376	SLC25A13	cis	cerebellum	SCAN
rs7787376	ACN9	cis	parietal	SCAN
rs7787376	AP4M1	cis	cerebellum	SCAN
rs7787376	AZGP1	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96745200-96746400	Enhancers	Primary B cells from peripheral blood	blood
2	chr7:96745400-96746200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr7:96745400-96746400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:96745400-96746400	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:96745600-96746200	Enhancers	Fetal Brain Male	brain
6	chr7:96745600-96746400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr7:96745600-96746400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr7:96745600-96746400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr7:96745800-96746400	Enhancers	K562	blood
10	chr7:96745800-96746800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr7:96745800-96746800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr7:96746000-96746200	Enhancers	Primary B cells from cord blood	blood
13	chr7:96746000-96746200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:96746000-96746200	Enhancers	Adipose Nuclei	Adipose
15	chr7:96746000-96746200	Enhancers	NHEK	skin
16	chr7:96746000-96746400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:96746000-96746400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:96746000-96746400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:96746000-96746400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:96746000-96746400	Enhancers	Brain Cingulate Gyrus	brain
21	chr7:96746000-96746400	Enhancers	Fetal Muscle Leg	muscle
22	chr7:96746000-96746400	Enhancers	Placenta	Placenta
23	chr7:96746000-96746600	Flanking Active TSS	Colon Smooth Muscle	Colon
24	chr7:96746000-96746800	Flanking Active TSS	GM12878-XiMat	blood
25	chr7:96746000-96747800	Active TSS	Rectal Smooth Muscle	rectum
26	chr7:96746000-96748000	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr7:96746000-96748000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:96746000-96748600	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr7:96746000-96748800	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr7:96746000-96749000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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