Variant report

Variant	rs1880732
Chromosome Location	chr7:96767866-96767867
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:96747720..96750174-chr7:96767579..96769561,2	K562	blood:
2	chr7:96722317..96724979-chr7:96765637..96768618,2	MCF-7	breast:
3	chr7:96767307..96769566-chr7:96804209..96806523,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1014341	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10229181	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10231916	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10233801	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10235199	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10246622	0.82[ASN][1000 genomes]
rs10252102	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10260298	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10274547	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10275135	0.85[ASN][1000 genomes]
rs10279603	0.81[ASN][1000 genomes]
rs10281783	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11972232	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199289	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1199290	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1199291	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1199292	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12056091	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12669915	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12671362	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13475	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1534370	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1917941	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2140954	0.83[ASN][1000 genomes]
rs28646010	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28825121	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34159711	0.82[EUR][1000 genomes]
rs4729330	0.83[ASN][1000 genomes]
rs62499473	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6465571	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6943457	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6961807	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963921	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6973369	0.85[ASN][1000 genomes]
rs73233819	0.83[ASN][1000 genomes]
rs7787376	0.82[ASN][1000 genomes]
rs7794886	0.85[ASN][1000 genomes]
rs7803945	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7810432	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7811797	0.85[ASN][1000 genomes]
rs9656043	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96747600-96768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:96747800-96768200	Weak transcription	Aorta	Aorta
3	chr7:96748400-96768200	Weak transcription	Right Ventricle	heart
4	chr7:96748400-96768400	Weak transcription	Psoas Muscle	Psoas
5	chr7:96749000-96768200	Weak transcription	Right Atrium	heart
6	chr7:96749200-96768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:96749400-96768000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:96749400-96768200	Weak transcription	Primary T cells from cord blood	blood
9	chr7:96755000-96768000	Weak transcription	Adipose Nuclei	Adipose
10	chr7:96756600-96768000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:96756600-96768000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:96759200-96768400	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:96760000-96768000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:96760000-96768000	Weak transcription	Spleen	Spleen
15	chr7:96760000-96768200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:96760000-96768200	Weak transcription	Esophagus	oesophagus
17	chr7:96760200-96768000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:96760200-96768200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:96760400-96768000	Weak transcription	Liver	Liver
20	chr7:96760400-96768000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:96760400-96768200	Weak transcription	Gastric	stomach
22	chr7:96760400-96768200	Weak transcription	Left Ventricle	heart
23	chr7:96760400-96796800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:96762800-96768200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:96762800-96768600	Weak transcription	Fetal Lung	lung
26	chr7:96764000-96768000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:96764400-96773000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:96764800-96768200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:96765000-96768000	Weak transcription	Fetal Intestine Large	intestine
30	chr7:96765000-96768600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:96765400-96772200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr7:96766000-96769800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
33	chr7:96766400-96768000	Weak transcription	Ovary	ovary
34	chr7:96766400-96769200	ZNF genes & repeats	Dnd41	blood
35	chr7:96766400-96773000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr7:96766600-96769600	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr7:96766600-96769800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
38	chr7:96766800-96768400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:96766800-96772000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
40	chr7:96767000-96769200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:96767000-96769400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
42	chr7:96767000-96771000	Weak transcription	A549	lung
43	chr7:96767200-96768800	ZNF genes & repeats	Fetal Stomach	stomach
44	chr7:96767200-96769200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr7:96767200-96771600	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr7:96767400-96768000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:96767400-96768000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:96767400-96769000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:96767400-96771600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:96767600-96768000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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