Variant report

Variant	rs2140954
Chromosome Location	chr7:96742919-96742920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:96742734-96742965	IMR90	lung:	n/a	chr7:96742842-96742853
2	ZNF384	chr7:96742710-96743032	K562	blood:	n/a	n/a
3	CEBPB	chr7:96742683-96743005	K562	blood:	n/a	chr7:96742842-96742853
4	CEBPB	chr7:96742769-96742963	HepG2	liver:	n/a	chr7:96742842-96742853

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96742752..96744612-chr7:96775849..96777436,2	K562	blood:
2	chr7:96742723..96744920-chr7:96746595..96749383,2	K562	blood:

Variant related genes	Relation type
ACN9	TF binding region
ENSG00000196636	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1014341	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10229181	0.86[CHB][hapmap]
rs10231916	0.86[CHB][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10235199	0.86[CHB][hapmap];0.81[YRI][hapmap]
rs10246622	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10252102	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10260298	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs10275135	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10279603	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11972232	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs11980904	0.84[ASN][1000 genomes]
rs1199289	0.86[CHB][hapmap]
rs1199290	0.82[ASN][1000 genomes]
rs1199291	0.81[ASN][1000 genomes]
rs1199292	0.86[CHB][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs12056091	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12669915	0.86[CHB][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs12671362	0.81[ASN][1000 genomes]
rs12671685	0.85[CHB][hapmap]
rs13475	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs1534370	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs1880732	0.83[ASN][1000 genomes]
rs28646010	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28825121	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4729330	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465571	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs6943457	0.80[ASN][1000 genomes]
rs6958059	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6961807	0.83[ASN][1000 genomes]
rs6963921	0.81[ASN][1000 genomes]
rs6973369	0.86[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73233819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787376	0.81[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7794886	0.86[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7803945	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7810432	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs7811797	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96741800-96745600	Weak transcription	Fetal Brain Male	brain

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