Variant report

Variant	rs10246622
Chromosome Location	chr7:96734057-96734058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:96733675..96734581-chr7:97473113..97473969,2	MCF-7	breast:
2	chr7:96733769..96734552-chr7:97557710..97558244,2	MCF-7	breast:
3	chr7:96733723..96734557-chr7:96808564..96809069,3	MCF-7	breast:
4	chr7:96733720..96734656-chr7:96808486..96809428,8	K562	blood:
5	chr7:96733732..96734563-chr7:96808460..96809316,2	MCF-7	breast:
6	chr7:96733650..96734674-chr7:97464552..97465561,7	K562	blood:
7	chr7:96733598..96734225-chr7:97473208..97474003,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1014341	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10229181	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10231916	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10235199	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10252102	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10260298	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10275135	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10279603	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11972232	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11980904	0.84[ASN][1000 genomes]
rs1199289	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1199290	0.81[ASN][1000 genomes]
rs1199291	0.80[ASN][1000 genomes]
rs1199292	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12056091	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12669915	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.82[ASN][1000 genomes]
rs13475	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs1534370	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1880732	0.82[ASN][1000 genomes]
rs2140954	0.86[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2693313	0.92[CEU][hapmap]
rs28646010	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28825121	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4729330	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6465571	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6958059	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6961807	0.82[ASN][1000 genomes]
rs6973369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73233819	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7787376	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7794886	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7803945	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7810432	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7811797	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96733800-96734200	Bivalent Enhancer	A549	lung
2	chr7:96733800-96734400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:96733800-96734400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:96733800-96734400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr7:96733800-96734400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:96733800-96734400	Enhancers	Liver	Liver
7	chr7:96733800-96734400	Enhancers	Brain Cingulate Gyrus	brain
8	chr7:96733800-96734400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:96733800-96734400	Enhancers	Brain Substantia Nigra	brain
10	chr7:96733800-96734400	Enhancers	HMEC	breast
11	chr7:96733800-96734400	Enhancers	NHLF	lung
12	chr7:96734000-96734200	Bivalent Enhancer	Fetal Lung	lung
13	chr7:96734000-96734400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr7:96734000-96734400	Enhancers	Brain Anterior Caudate	brain
15	chr7:96734000-96734400	Enhancers	Rectal Smooth Muscle	rectum
16	chr7:96734000-96734400	Enhancers	Osteobl	bone

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