Variant report

Variant	rs1353586
Chromosome Location	chr5:178318781-178318782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11249606	1.00[AMR][1000 genomes]
rs13184447	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2047355	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2856351	1.00[AMR][1000 genomes]
rs4700760	1.00[AMR][1000 genomes]
rs4700926	1.00[AMR][1000 genomes]
rs7711730	1.00[AMR][1000 genomes]
rs7731646	1.00[AMR][1000 genomes]
rs903988	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178296000-178319200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
2	chr5:178296200-178319200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:178308400-178322600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:178311200-178322400	Weak transcription	Hela-S3	cervix
5	chr5:178313600-178322600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:178313600-178322800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:178314400-178325000	Weak transcription	Fetal Brain Male	brain
8	chr5:178315600-178322400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:178315600-178322600	Weak transcription	Brain Angular Gyrus	brain
10	chr5:178317000-178322600	Weak transcription	Right Ventricle	heart
11	chr5:178317200-178322200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:178317200-178322400	Weak transcription	Brain Anterior Caudate	brain
13	chr5:178317200-178322600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:178317200-178322600	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:178317200-178322600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr5:178317200-178322800	Weak transcription	Gastric	stomach
17	chr5:178317400-178319000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:178317400-178319000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr5:178317400-178319800	Enhancers	Placenta	Placenta
20	chr5:178317400-178320800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:178317400-178321000	Weak transcription	Adipose Nuclei	Adipose
22	chr5:178317400-178322400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr5:178317400-178322400	Weak transcription	Brain Germinal Matrix	brain
24	chr5:178317400-178322400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr5:178317400-178322400	Weak transcription	Brain Substantia Nigra	brain
26	chr5:178317400-178322400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr5:178317400-178322400	Weak transcription	Psoas Muscle	Psoas
28	chr5:178317400-178322400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:178317400-178322400	Weak transcription	Thymus	Thymus
30	chr5:178317400-178322600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr5:178317400-178322600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr5:178317400-178322600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr5:178317400-178322600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:178317400-178322600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr5:178317400-178322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:178317400-178322600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr5:178317400-178322600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:178317400-178322600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr5:178317400-178322600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr5:178317400-178322600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr5:178317400-178322600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr5:178317400-178322600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr5:178317400-178322600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr5:178317400-178322600	Weak transcription	Aorta	Aorta
45	chr5:178317400-178322600	Weak transcription	Brain Hippocampus Middle	brain
46	chr5:178317400-178322600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr5:178317400-178322600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr5:178317400-178322600	Weak transcription	Fetal Lung	lung
49	chr5:178317400-178322600	Weak transcription	Fetal Muscle Leg	muscle
50	chr5:178317400-178322600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links