Variant report

Variant	rs4700926
Chromosome Location	chr5:178342885-178342886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178338284..178340822-chr5:178341370..178344365,2	K562	blood:

Variant related genes	Relation type
ENSG00000198939	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11249606	1.00[AMR][1000 genomes]
rs13184447	1.00[AMR][1000 genomes]
rs1353586	1.00[AMR][1000 genomes]
rs2047355	1.00[AMR][1000 genomes]
rs2856351	1.00[AMR][1000 genomes]
rs4700760	1.00[AMR][1000 genomes]
rs7711730	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7731646	1.00[AMR][1000 genomes]
rs903988	1.00[MEX][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver
2	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr5:178340400-178344800	Weak transcription	Fetal Brain Male	brain
4	chr5:178340400-178345400	Weak transcription	Placenta	Placenta
5	chr5:178340600-178343000	Weak transcription	Brain Substantia Nigra	brain
6	chr5:178341600-178343400	ZNF genes & repeats	Psoas Muscle	Psoas
7	chr5:178341600-178343800	ZNF genes & repeats	Aorta	Aorta
8	chr5:178341600-178345800	ZNF genes & repeats	Fetal Lung	lung
9	chr5:178341600-178345800	ZNF genes & repeats	Ovary	ovary
10	chr5:178341600-178347000	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr5:178341600-178347200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
12	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
13	chr5:178341800-178343800	ZNF genes & repeats	Pancreas	Pancrea
14	chr5:178342000-178343600	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:178342000-178348200	Weak transcription	Right Ventricle	heart
16	chr5:178342200-178343000	Weak transcription	Brain Anterior Caudate	brain
17	chr5:178342200-178343000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr5:178342200-178343200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:178342200-178345000	Weak transcription	Fetal Heart	heart
20	chr5:178342600-178343400	ZNF genes & repeats	Fetal Stomach	stomach
21	chr5:178342800-178343400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:178342800-178343400	ZNF genes & repeats	Lung	lung
23	chr5:178342800-178343800	ZNF genes & repeats	Brain Angular Gyrus	brain
24	chr5:178342800-178343800	Strong transcription	Brain Germinal Matrix	brain
25	chr5:178342800-178343800	ZNF genes & repeats	Left Ventricle	heart
26	chr5:178342800-178343800	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr5:178342800-178344000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
28	chr5:178342800-178346000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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