Variant report

Variant	rs7711730
Chromosome Location	chr5:178350182-178350183
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11249606	1.00[AMR][1000 genomes]
rs13184447	1.00[AMR][1000 genomes]
rs1353586	1.00[AMR][1000 genomes]
rs2047355	1.00[AMR][1000 genomes]
rs2856351	1.00[AMR][1000 genomes]
rs4700760	1.00[AMR][1000 genomes]
rs4700926	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7731646	1.00[AMR][1000 genomes]
rs903988	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600464	chr5:178344648-178350709	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv600465	chr5:178344648-178352002	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600466	chr5:178344648-178352245	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv600467	chr5:178344648-178352820	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv600468	chr5:178344648-178353156	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv819936	chr5:178345813-178351240	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv823354	chr5:178345876-178351699	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv821324	chr5:178345876-178353585	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv823355	chr5:178346031-178351699	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv5156	chr5:178346825-178367067	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3470265	chr5:178348231-178353308	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3470264	chr5:178348285-178353276	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3470262	chr5:178348302-178353229	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3470266	chr5:178348363-178353198	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv12223	chr5:178348371-178353189	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv1833783	chr5:178348445-178353156	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv1835389	chr5:178348445-178353321	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1837400	chr5:178348445-178353321	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv1839542	chr5:178348445-178353321	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1839395	chr5:178348554-178350709	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
21	nsv600469	chr5:178348554-178350709	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
22	nsv600470	chr5:178348554-178351391	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv600471	chr5:178348554-178352245	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv600472	chr5:178348554-178352386	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv600473	chr5:178348554-178352820	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv1835813	chr5:178348554-178353156	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv600474	chr5:178348554-178353156	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
28	esv1841499	chr5:178348554-178353321	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv600475	chr5:178348605-178352002	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv600476	chr5:178348605-178352245	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
31	nsv600477	chr5:178348605-178352820	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
32	esv1839898	chr5:178348605-178353156	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
33	esv1841549	chr5:178348605-178353156	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
34	nsv600478	chr5:178348933-178352245	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
35	nsv600479	chr5:178348933-178353156	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
36	nsv600480	chr5:178349057-178351512	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
37	nsv600481	chr5:178349057-178352245	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
38	nsv964988	chr5:178349100-178353458	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
39	nsv600482	chr5:178349391-178352245	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
40	nsv600483	chr5:178349391-178352820	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
41	nsv600484	chr5:178349438-178352245	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178346400-178351000	ZNF genes & repeats	Brain Hippocampus Middle	brain
5	chr5:178347800-178350400	ZNF genes & repeats	Brain Anterior Caudate	brain
6	chr5:178347800-178350400	ZNF genes & repeats	Brain Substantia Nigra	brain
7	chr5:178347800-178352400	ZNF genes & repeats	Fetal Lung	lung
8	chr5:178347800-178366800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr5:178347800-178367400	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr5:178348000-178350400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
11	chr5:178348000-178359800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:178348000-178360200	ZNF genes & repeats	Left Ventricle	heart
13	chr5:178348600-178352400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:178348800-178350200	Weak transcription	Fetal Stomach	stomach
15	chr5:178348800-178352200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:178348800-178357800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr5:178349400-178350600	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr5:178349800-178352200	Weak transcription	Brain Angular Gyrus	brain

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