Variant report

Variant	rs2047355
Chromosome Location	chr5:178326232-178326233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178324334..178326418-chr5:178335750..178338330,2	K562	blood:

Variant related genes	Relation type
ENSG00000213328	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11249606	1.00[AMR][1000 genomes]
rs13184447	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1353586	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2856351	1.00[AMR][1000 genomes]
rs4700760	1.00[AMR][1000 genomes]
rs4700926	1.00[AMR][1000 genomes]
rs7711730	1.00[AMR][1000 genomes]
rs7731646	1.00[AMR][1000 genomes]
rs903988	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178327400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr5:178323600-178328000	Weak transcription	Fetal Lung	lung
3	chr5:178323600-178328200	Weak transcription	Gastric	stomach
4	chr5:178323600-178328600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:178323600-178331200	Weak transcription	Pancreas	Pancrea
6	chr5:178323600-178332800	Weak transcription	Left Ventricle	heart
7	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:178323800-178328200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:178323800-178329000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:178323800-178329600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:178323800-178329800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:178323800-178331000	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:178323800-178332800	Weak transcription	Placenta	Placenta
14	chr5:178323800-178332800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:178323800-178333800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
17	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:178324000-178327000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:178324000-178328000	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:178324000-178328200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:178324000-178328200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr5:178324000-178328400	Weak transcription	Brain Substantia Nigra	brain
23	chr5:178324000-178332800	Weak transcription	Brain Angular Gyrus	brain
24	chr5:178324000-178332800	Weak transcription	Brain Anterior Caudate	brain
25	chr5:178324400-178327600	Weak transcription	Brain Germinal Matrix	brain
26	chr5:178325200-178327000	Weak transcription	Fetal Brain Male	brain
27	chr5:178325400-178326400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:178325600-178326400	ZNF genes & repeats	Aorta	Aorta
29	chr5:178325800-178332800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:178326000-178326600	Weak transcription	Ovary	ovary
31	chr5:178326000-178328600	Weak transcription	Fetal Stomach	stomach
32	chr5:178326200-178328400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr5:178326200-178328800	ZNF genes & repeats	Fetal Brain Female	brain

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