Variant report

Variant	rs1354994
Chromosome Location	chr16:31878457-31878458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31710665..31714360-chr16:31877425..31881145,4	MCF-7	breast:
2	chr16:31723014..31724821-chr16:31877118..31878955,2	MCF-7	breast:
3	chr16:31461549..31464190-chr16:31877877..31881538,3	MCF-7	breast:
4	chr16:31876300..31879894-chr16:31880296..31883851,5	K562	blood:

Variant related genes	Relation type
ENSG00000259874	Chromatin interaction
ENSG00000261731	Chromatin interaction
ENSG00000197302	Chromatin interaction
ENSG00000260568	Chromatin interaction
ENSG00000131797	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1395526	1.00[AMR][1000 genomes]
rs1876507	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3905907	1.00[AMR][1000 genomes]
rs3913869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889561	1.00[AMR][1000 genomes]
rs55771542	1.00[AMR][1000 genomes]
rs55801950	1.00[AMR][1000 genomes]
rs56007329	1.00[AMR][1000 genomes]
rs56279146	1.00[AMR][1000 genomes]
rs58461706	1.00[AMR][1000 genomes]
rs61467517	1.00[AMR][1000 genomes]
rs6565283	1.00[AMR][1000 genomes]
rs6565292	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7193710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017509	1.00[AMR][1000 genomes]
rs74017511	1.00[AMR][1000 genomes]
rs74017517	1.00[AMR][1000 genomes]
rs74017519	1.00[AMR][1000 genomes]
rs74017527	1.00[AMR][1000 genomes]
rs74017528	1.00[AMR][1000 genomes]
rs74017533	1.00[AMR][1000 genomes]
rs74017534	1.00[AMR][1000 genomes]
rs8044900	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8047836	1.00[AMR][1000 genomes]
rs8050055	1.00[AMR][1000 genomes]
rs8050428	1.00[AMR][1000 genomes]
rs8050437	1.00[AMR][1000 genomes]
rs8057397	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8062868	1.00[AMR][1000 genomes]
rs9928474	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv905747	chr16:31394179-31888684	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	123 gene(s)	inside rSNPs	diseases
2	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3446880	chr16:31734687-31891223	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31873800-31879600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr16:31874000-31879600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr16:31874000-31879800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr16:31874000-31880000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr16:31874000-31880000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr16:31874200-31880000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr16:31876800-31879600	Weak transcription	Primary T cells from cord blood	blood
8	chr16:31876800-31879600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr16:31876800-31880000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr16:31877000-31879800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr16:31877600-31880200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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