Variant report

Variant	rs7193710
Chromosome Location	chr16:31922108-31922109
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1354994	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1395526	1.00[AMR][1000 genomes]
rs1876507	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3905907	1.00[AMR][1000 genomes]
rs3913869	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889561	1.00[AMR][1000 genomes]
rs55771542	1.00[AMR][1000 genomes]
rs55801950	1.00[AMR][1000 genomes]
rs56007329	1.00[AMR][1000 genomes]
rs56279146	1.00[AMR][1000 genomes]
rs58461706	1.00[AMR][1000 genomes]
rs61467517	1.00[AMR][1000 genomes]
rs6565283	1.00[AMR][1000 genomes]
rs6565292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017509	1.00[AMR][1000 genomes]
rs74017511	1.00[AMR][1000 genomes]
rs74017517	1.00[AMR][1000 genomes]
rs74017519	1.00[AMR][1000 genomes]
rs74017527	1.00[AMR][1000 genomes]
rs74017528	1.00[AMR][1000 genomes]
rs74017533	1.00[AMR][1000 genomes]
rs74017534	1.00[AMR][1000 genomes]
rs8044900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8047836	1.00[AMR][1000 genomes]
rs8050055	1.00[AMR][1000 genomes]
rs8050428	1.00[AMR][1000 genomes]
rs8050437	1.00[AMR][1000 genomes]
rs8057397	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8062868	1.00[AMR][1000 genomes]
rs9928474	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv833196	chr16:31897381-32068953	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv1850460	chr16:31905688-32097085	Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv2640928	chr16:31920888-31924919	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2375355	chr16:31921272-31924451	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3313338	chr16:31921342-31924376	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3313339	chr16:31921374-31924369	Strong transcription Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3313337	chr16:31921465-31924270	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3313340	chr16:31921479-31924269	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv11658	chr16:31921501-31924157	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31907800-31924400	Weak transcription	HSMMtube	muscle
2	chr16:31908000-31924600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr16:31910400-31922400	Weak transcription	HSMM	muscle
4	chr16:31917000-31931200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr16:31917000-31931600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr16:31917000-31932000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr16:31917000-31932200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr16:31917000-31932400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:31917000-31932400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr16:31917000-31934000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr16:31917000-31935200	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr16:31917000-31935400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr16:31917200-31930600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
14	chr16:31917200-31930800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
15	chr16:31917200-31931600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
16	chr16:31917400-31930200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr16:31917400-31930600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr16:31917600-31923400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr16:31918000-31930400	ZNF genes & repeats	A549	lung
20	chr16:31918200-31922600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr16:31918200-31924400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr16:31918200-31924400	Weak transcription	Pancreas	Pancrea
23	chr16:31918200-31924400	Weak transcription	Thymus	Thymus
24	chr16:31918400-31924400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr16:31918800-31923600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr16:31919600-31930400	ZNF genes & repeats	Dnd41	blood
27	chr16:31920200-31922800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr16:31920400-31930400	ZNF genes & repeats	GM12878-XiMat	blood
29	chr16:31920800-31924400	Weak transcription	Esophagus	oesophagus
30	chr16:31920800-31924400	Weak transcription	Placenta	Placenta
31	chr16:31920800-31924400	Weak transcription	Gastric	stomach
32	chr16:31920800-31924400	Weak transcription	Ovary	ovary
33	chr16:31920800-31929800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
34	chr16:31921000-31922800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr16:31921200-31922200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr16:31921200-31924400	Weak transcription	Stomach Mucosa	stomach
37	chr16:31921200-31932400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr16:31921400-31922200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr16:31921800-31922400	Weak transcription	Primary B cells from cord blood	blood
40	chr16:31921800-31922600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr16:31921800-31923600	Weak transcription	Primary monocytes fromperipheralblood	blood

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