Variant report
| Variant | rs74017534 |
|---|---|
| Chromosome Location | chr16:31822267-31822268 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | HNF4A | chr16:31822234-31822543 | HepG2 | liver: | n/a | chr16:31822300-31822322 chr16:31822310-31822325 chr16:31822312-31822325 chr16:31822312-31822325 chr16:31822312-31822325 |
| 2 | HNF4A | chr16:31822228-31822524 | HepG2 | liver: | n/a | chr16:31822300-31822322 chr16:31822310-31822325 chr16:31822312-31822325 chr16:31822312-31822325 chr16:31822312-31822325 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| VN1R3 | TF binding region |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1354994 | 1.00[AMR][1000 genomes] |
| rs1395526 | 1.00[AMR][1000 genomes] |
| rs1876507 | 1.00[AMR][1000 genomes] |
| rs3905907 | 1.00[AMR][1000 genomes] |
| rs3913869 | 1.00[AMR][1000 genomes] |
| rs4889561 | 1.00[AMR][1000 genomes] |
| rs55771542 | 1.00[AMR][1000 genomes] |
| rs55801950 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56007329 | 1.00[AMR][1000 genomes] |
| rs56279146 | 1.00[AMR][1000 genomes] |
| rs58461706 | 1.00[AMR][1000 genomes] |
| rs61467517 | 1.00[AMR][1000 genomes] |
| rs6565283 | 1.00[AMR][1000 genomes] |
| rs6565292 | 1.00[AMR][1000 genomes] |
| rs7193710 | 1.00[AMR][1000 genomes] |
| rs74017509 | 1.00[AMR][1000 genomes] |
| rs74017511 | 1.00[AMR][1000 genomes] |
| rs74017517 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74017519 | 1.00[AMR][1000 genomes] |
| rs74017527 | 1.00[AMR][1000 genomes] |
| rs74017528 | 1.00[AMR][1000 genomes] |
| rs74017533 | 1.00[AMR][1000 genomes] |
| rs8044900 | 1.00[AMR][1000 genomes] |
| rs8047836 | 1.00[AMR][1000 genomes] |
| rs8050055 | 1.00[AMR][1000 genomes] |
| rs8050428 | 1.00[AMR][1000 genomes] |
| rs8050437 | 1.00[AMR][1000 genomes] |
| rs8057397 | 1.00[AMR][1000 genomes] |
| rs8062868 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9928474 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv905747 | chr16:31394179-31888684 | Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 123 gene(s) | inside rSNPs | diseases |
| 2 | esv3366795 | chr16:31534951-31827424 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 3 | nsv1067321 | chr16:31652036-31959992 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
| 4 | nsv918074 | chr16:31669781-31935033 | ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 5 | nsv1063037 | chr16:31669981-31934894 | Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 6 | nsv542903 | chr16:31669981-31934894 | Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 7 | esv3446880 | chr16:31734687-31891223 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 8 | nsv1787 | chr16:31816780-31847875 | ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS | TF binding regionCpG islandlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
