Variant report

Variant	rs8044900
Chromosome Location	chr16:31911422-31911423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1354994	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1395526	1.00[AMR][1000 genomes]
rs1876507	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3905907	1.00[AMR][1000 genomes]
rs3913869	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889561	1.00[AMR][1000 genomes]
rs55771542	1.00[AMR][1000 genomes]
rs55801950	1.00[AMR][1000 genomes]
rs56007329	1.00[AMR][1000 genomes]
rs56279146	1.00[AMR][1000 genomes]
rs58461706	1.00[AMR][1000 genomes]
rs61467517	1.00[AMR][1000 genomes]
rs6565283	1.00[AMR][1000 genomes]
rs6565292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7193710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017509	1.00[AMR][1000 genomes]
rs74017511	1.00[AMR][1000 genomes]
rs74017517	1.00[AMR][1000 genomes]
rs74017519	1.00[AMR][1000 genomes]
rs74017527	1.00[AMR][1000 genomes]
rs74017528	1.00[AMR][1000 genomes]
rs74017533	1.00[AMR][1000 genomes]
rs74017534	1.00[AMR][1000 genomes]
rs8047836	1.00[AMR][1000 genomes]
rs8050055	1.00[AMR][1000 genomes]
rs8050428	1.00[AMR][1000 genomes]
rs8050437	1.00[AMR][1000 genomes]
rs8057397	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8062868	1.00[AMR][1000 genomes]
rs9928474	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv833196	chr16:31897381-32068953	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv1850460	chr16:31905688-32097085	Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31889400-31911600	ZNF genes & repeats	Primary B cells from cord blood	blood
2	chr16:31893000-31913200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:31893200-31911800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr16:31893400-31911800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr16:31893400-31912000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr16:31893600-31917800	Weak transcription	Colon Smooth Muscle	Colon
7	chr16:31897600-31912000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr16:31903600-31911600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr16:31903600-31916800	Weak transcription	Stomach Mucosa	stomach
10	chr16:31905000-31912000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr16:31906000-31911800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr16:31906600-31917200	Weak transcription	Pancreas	Pancrea
13	chr16:31907400-31917200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr16:31907600-31912000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr16:31907600-31917200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:31907600-31921400	Weak transcription	Hela-S3	cervix
17	chr16:31907800-31911600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr16:31907800-31911800	Weak transcription	Fetal Intestine Small	intestine
19	chr16:31907800-31917000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr16:31907800-31917000	Weak transcription	Fetal Stomach	stomach
21	chr16:31907800-31917200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr16:31907800-31917200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr16:31907800-31917200	Weak transcription	Aorta	Aorta
24	chr16:31907800-31917200	Weak transcription	Esophagus	oesophagus
25	chr16:31907800-31917400	Weak transcription	Gastric	stomach
26	chr16:31907800-31924400	Weak transcription	HSMMtube	muscle
27	chr16:31908000-31911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr16:31908000-31913200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr16:31908000-31917000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr16:31908000-31917000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr16:31908000-31917000	Weak transcription	Thymus	Thymus
32	chr16:31908000-31917200	Weak transcription	Left Ventricle	heart
33	chr16:31908000-31917200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr16:31908000-31917200	Weak transcription	Right Ventricle	heart
35	chr16:31908000-31917400	Weak transcription	Ovary	ovary
36	chr16:31908000-31924600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr16:31908200-31913800	Weak transcription	Fetal Thymus	thymus
38	chr16:31908200-31917400	Weak transcription	Small Intestine	intestine
39	chr16:31908600-31911600	Weak transcription	Fetal Intestine Large	intestine
40	chr16:31908600-31911800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr16:31908800-31911800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr16:31908800-31911800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr16:31908800-31912000	Strong transcription	Duodenum Mucosa	Duodenum
44	chr16:31908800-31913600	Weak transcription	NH-A	brain
45	chr16:31908800-31917200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr16:31908800-31917400	Weak transcription	Placenta	Placenta
47	chr16:31909400-31911800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr16:31909400-31917000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr16:31909400-31917200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr16:31909400-31917800	Weak transcription	Muscle Satellite Cultured Cells	--

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