Variant report

Variant	rs3905907
Chromosome Location	chr16:31892356-31892357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31870846..31873491-chr16:31890033..31893376,3	K562	blood:
2	chr16:31723218..31725989-chr16:31891646..31893746,3	K562	blood:
3	chr16:31724116..31726069-chr16:31891646..31894239,2	K562	blood:
4	chr16:31191426..31193372-chr16:31891208..31893544,2	MCF-7	breast:
5	chr16:31724410..31726103-chr16:31891793..31894409,2	MCF-7	breast:
6	chr16:31468715..31471317-chr16:31890566..31892808,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261731	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000140691	Chromatin interaction
ENSG00000197302	Chromatin interaction
ENSG00000260267	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1354994	1.00[AMR][1000 genomes]
rs1395526	1.00[AMR][1000 genomes]
rs1876507	1.00[AMR][1000 genomes]
rs3913869	1.00[AMR][1000 genomes]
rs4889561	1.00[AMR][1000 genomes]
rs55771542	1.00[AMR][1000 genomes]
rs55801950	1.00[AMR][1000 genomes]
rs56007329	1.00[AMR][1000 genomes]
rs56279146	1.00[AMR][1000 genomes]
rs58461706	1.00[AMR][1000 genomes]
rs61467517	1.00[AMR][1000 genomes]
rs6565283	1.00[AMR][1000 genomes]
rs6565292	1.00[AMR][1000 genomes]
rs7193710	1.00[AMR][1000 genomes]
rs74017509	1.00[AMR][1000 genomes]
rs74017511	1.00[AMR][1000 genomes]
rs74017517	1.00[AMR][1000 genomes]
rs74017519	1.00[AMR][1000 genomes]
rs74017527	1.00[AMR][1000 genomes]
rs74017528	1.00[AMR][1000 genomes]
rs74017533	1.00[AMR][1000 genomes]
rs74017534	1.00[AMR][1000 genomes]
rs8044900	1.00[AMR][1000 genomes]
rs8047836	1.00[AMR][1000 genomes]
rs8050055	1.00[AMR][1000 genomes]
rs8050428	1.00[AMR][1000 genomes]
rs8050437	1.00[AMR][1000 genomes]
rs8057397	1.00[AMR][1000 genomes]
rs8062868	1.00[AMR][1000 genomes]
rs9928474	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31885200-31892400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr16:31886600-31893800	Weak transcription	Fetal Kidney	kidney
3	chr16:31886800-31894400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr16:31886800-31897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr16:31886800-31898200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:31886800-31901000	Weak transcription	Fetal Brain Male	brain
7	chr16:31887000-31894000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr16:31887000-31895400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr16:31887000-31901600	Weak transcription	Fetal Brain Female	brain
10	chr16:31887000-31902200	ZNF genes & repeats	A549	lung
11	chr16:31887200-31900800	Weak transcription	Brain Germinal Matrix	brain
12	chr16:31887400-31900800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr16:31887800-31892400	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr16:31887800-31895800	Weak transcription	Fetal Lung	lung
15	chr16:31887800-31907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:31888400-31895600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr16:31888400-31895800	Weak transcription	Fetal Thymus	thymus
18	chr16:31888800-31895200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr16:31889000-31893800	Genic enhancers	Primary T cells fromperipheralblood	blood
20	chr16:31889200-31892400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr16:31889200-31895800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr16:31889400-31893400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
23	chr16:31889400-31894200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr16:31889400-31895400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr16:31889400-31911600	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr16:31889600-31894000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr16:31889600-31897600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr16:31889800-31896400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr16:31890000-31893800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr16:31890000-31894000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr16:31890000-31895800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr16:31890000-31896400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr16:31890000-31896600	Weak transcription	Aorta	Aorta
34	chr16:31890000-31896600	Weak transcription	Colonic Mucosa	Colon
35	chr16:31890000-31897600	Strong transcription	Fetal Intestine Large	intestine
36	chr16:31890200-31893200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr16:31890200-31893400	Enhancers	HepG2	liver
38	chr16:31890200-31894400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr16:31890200-31895200	Weak transcription	Liver	Liver
40	chr16:31890200-31895800	Weak transcription	Thymus	Thymus
41	chr16:31890200-31896400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr16:31890200-31896400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr16:31890200-31897600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr16:31890200-31905800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr16:31890400-31895200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr16:31890800-31892400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
47	chr16:31890800-31894000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr16:31890800-31894000	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr16:31891000-31892400	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr16:31891000-31892800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood

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