Variant report

Variant	rs1356108
Chromosome Location	chr3:102209649-102209650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1151322	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1151323	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1151336	0.80[EUR][1000 genomes]
rs1284718	0.80[EUR][1000 genomes]
rs1284729	0.80[EUR][1000 genomes]
rs1284774	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284775	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284776	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284777	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284778	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284779	0.85[ASN][1000 genomes]
rs1284781	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284782	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1284783	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1284787	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1290380	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1356107	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1620217	0.95[ASN][1000 genomes]
rs1710062	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102206000-102211400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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