Variant report
| Variant | rs1284783 |
|---|---|
| Chromosome Location | chr3:102239119-102239120 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1151322 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1151323 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1151336 | 0.85[EUR][1000 genomes] |
| rs1284718 | 0.85[EUR][1000 genomes] |
| rs1284729 | 0.85[EUR][1000 genomes] |
| rs1284774 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1284775 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1284776 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1284777 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1284778 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1284779 | 0.83[ASN][1000 genomes] |
| rs1284781 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1284782 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1284787 | 0.87[EUR][1000 genomes] |
| rs1290380 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1356107 | 0.80[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1356108 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1620217 | 1.00[ASN][1000 genomes] |
| rs1710062 | 0.91[ASN][1000 genomes] |
| rs7647414 | 0.85[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007340 | chr3:102108954-102725099 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv536676 | chr3:102108954-102725099 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv1009392 | chr3:102199756-102631205 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv3926 | chr3:102213136-102257633 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:102229800-102239200 | Weak transcription | Fetal Lung | lung |
| 2 | chr3:102238400-102240000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
