Variant report

Variant	rs1284718
Chromosome Location	chr3:102253323-102253324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1151322	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1151325	0.88[ASN][1000 genomes]
rs1151329	0.88[ASN][1000 genomes]
rs1151331	0.88[ASN][1000 genomes]
rs1151332	0.89[ASN][1000 genomes]
rs1151333	0.89[ASN][1000 genomes]
rs1151336	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284719	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1284720	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1284726	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1284727	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1284728	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1284729	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284741	0.84[ASN][1000 genomes]
rs1284773	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1284778	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1284783	0.85[EUR][1000 genomes]
rs1284785	0.85[ASN][1000 genomes]
rs1284786	0.88[ASN][1000 genomes]
rs1284787	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1298551	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1298964	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1300120	0.85[ASN][1000 genomes]
rs1356108	0.80[EUR][1000 genomes]
rs1399762	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1515479	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1701664	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1701685	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1701687	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1715530	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1849922	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3926	chr3:102213136-102257633	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1843717	chr3:102251299-102364297	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102244400-102255200	Weak transcription	Stomach Mucosa	stomach
2	chr3:102251600-102254200	Weak transcription	Hela-S3	cervix
3	chr3:102253000-102255000	Enhancers	Pancreatic Islets	Pancreatic Islet

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