Variant report
| Variant | rs1151333 |
|---|---|
| Chromosome Location | chr3:102253609-102253610 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1151325 | 0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1151329 | 0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1151331 | 0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1151332 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1151336 | 0.91[ASN][1000 genomes] |
| rs1284718 | 0.89[ASN][1000 genomes] |
| rs1284719 | 0.82[ASN][1000 genomes] |
| rs1284720 | 0.82[ASN][1000 genomes] |
| rs1284726 | 0.82[ASN][1000 genomes] |
| rs1284727 | 0.82[ASN][1000 genomes] |
| rs1284728 | 0.85[ASN][1000 genomes] |
| rs1284729 | 0.91[ASN][1000 genomes] |
| rs1284773 | 0.85[ASN][1000 genomes] |
| rs1284785 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1284786 | 0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1284787 | 0.90[ASN][1000 genomes] |
| rs1298551 | 0.83[ASN][1000 genomes] |
| rs1298964 | 0.82[ASN][1000 genomes] |
| rs1399762 | 0.82[ASN][1000 genomes] |
| rs1515479 | 0.82[ASN][1000 genomes] |
| rs1701664 | 0.82[ASN][1000 genomes] |
| rs1701685 | 0.82[ASN][1000 genomes] |
| rs1701687 | 0.82[ASN][1000 genomes] |
| rs1715530 | 0.82[ASN][1000 genomes] |
| rs1849922 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007340 | chr3:102108954-102725099 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv536676 | chr3:102108954-102725099 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv1009392 | chr3:102199756-102631205 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv3926 | chr3:102213136-102257633 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv1843717 | chr3:102251299-102364297 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:102244400-102255200 | Weak transcription | Stomach Mucosa | stomach |
| 2 | chr3:102251600-102254200 | Weak transcription | Hela-S3 | cervix |
| 3 | chr3:102253000-102255000 | Enhancers | Pancreatic Islets | Pancreatic Islet |
