Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1151325	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1151329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1151332	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1151333	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1151336	0.90[ASN][1000 genomes]
rs1284718	0.88[ASN][1000 genomes]
rs1284719	0.82[ASN][1000 genomes]
rs1284720	0.82[ASN][1000 genomes]
rs1284726	0.82[ASN][1000 genomes]
rs1284727	0.82[ASN][1000 genomes]
rs1284728	0.84[ASN][1000 genomes]
rs1284729	0.90[ASN][1000 genomes]
rs1284773	0.84[ASN][1000 genomes]
rs1284785	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1284786	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1284787	0.91[ASN][1000 genomes]
rs1298551	0.82[ASN][1000 genomes]
rs1298964	0.82[ASN][1000 genomes]
rs1399762	0.82[ASN][1000 genomes]
rs1515479	0.82[ASN][1000 genomes]
rs1701664	0.81[ASN][1000 genomes]
rs1701685	0.82[ASN][1000 genomes]
rs1701687	0.82[ASN][1000 genomes]
rs1715530	0.82[ASN][1000 genomes]
rs1849922	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3926	chr3:102213136-102257633	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102244400-102255200	Weak transcription	Stomach Mucosa	stomach
2	chr3:102248600-102249800	Enhancers	Small Intestine	intestine
3	chr3:102248600-102250200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:102248800-102249600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:102249000-102253000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:102249200-102250400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:102249400-102249800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:102249400-102249800	Flanking Active TSS	Hela-S3	cervix
9	chr3:102249400-102249800	Enhancers	HSMMtube	muscle
10	chr3:102249400-102250000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:102249400-102250000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:102249400-102250000	Enhancers	HMEC	breast

Quick Search: