Variant report

Variant	rs1399762
Chromosome Location	chr3:102295062-102295063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1151325	0.82[ASN][1000 genomes]
rs1151329	0.82[ASN][1000 genomes]
rs1151331	0.82[ASN][1000 genomes]
rs1151332	0.82[ASN][1000 genomes]
rs1151333	0.82[ASN][1000 genomes]
rs1151336	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1284718	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1284719	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1284720	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284726	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1284727	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1284728	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1284729	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1284741	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1284744	0.94[EUR][1000 genomes]
rs1284773	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1284786	0.82[ASN][1000 genomes]
rs1284787	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1290378	0.83[ASN][1000 genomes]
rs1298551	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1298964	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1300120	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13071126	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515479	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1701664	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1701685	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1701687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1715530	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849922	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs938423	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs938424	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs961832	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1843717	chr3:102251299-102364297	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102291400-102299400	Weak transcription	Liver	Liver

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