Variant report

Variant	rs1284787
Chromosome Location	chr3:102248721-102248722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:102185034..102185962-chr3:102248252..102249000,2	MCF-7	breast:
2	chr3:101954078..101955171-chr3:102248014..102249330,9	MCF-7	breast:
3	chr3:101954224..101955261-chr3:102248060..102248912,4	MCF-7	breast:
4	chr3:101947615..101948697-chr3:102248082..102248977,5	MCF-7	breast:
5	chr3:101947690..101948571-chr3:102248035..102249002,3	MCF-7	breast:
6	chr3:102184197..102185596-chr3:102248087..102248957,3	MCF-7	breast:
7	chr3:102189575..102190499-chr3:102248099..102248934,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1151322	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1151325	0.91[ASN][1000 genomes]
rs1151329	0.91[ASN][1000 genomes]
rs1151331	0.91[ASN][1000 genomes]
rs1151332	0.90[ASN][1000 genomes]
rs1151333	0.90[ASN][1000 genomes]
rs1151336	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284718	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1284719	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1284720	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1284726	0.91[ASN][1000 genomes]
rs1284727	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1284728	0.93[ASN][1000 genomes]
rs1284729	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1284741	0.84[ASN][1000 genomes]
rs1284773	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1284778	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1284783	0.87[EUR][1000 genomes]
rs1284785	0.87[ASN][1000 genomes]
rs1284786	0.91[ASN][1000 genomes]
rs1298551	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1298964	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1300120	0.86[ASN][1000 genomes]
rs1356108	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1399762	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1515479	0.91[ASN][1000 genomes]
rs1701664	0.90[ASN][1000 genomes]
rs1701685	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1701687	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1715530	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1849922	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs938423	0.80[ASN][1000 genomes]
rs938424	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3926	chr3:102213136-102257633	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102244400-102255200	Weak transcription	Stomach Mucosa	stomach
2	chr3:102247600-102249400	Enhancers	Hela-S3	cervix
3	chr3:102248000-102249000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:102248200-102249000	Enhancers	Ovary	ovary
5	chr3:102248400-102249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:102248600-102248800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:102248600-102249000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:102248600-102249800	Enhancers	Small Intestine	intestine
9	chr3:102248600-102250200	Enhancers	Muscle Satellite Cultured Cells	--

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