Variant report

Variant	rs136241
Chromosome Location	chr22:31209502-31209503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31198221..31200329-chr22:31208919..31210574,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184792	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs136232	0.93[CHB][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs136233	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs136238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs136252	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136257	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs136260	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136261	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136266	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136268	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136269	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136270	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136271	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136273	0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs136274	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs136279	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs136280	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs136281	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs136283	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136284	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136286	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136287	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136293	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs136299	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs136300	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5749167	0.90[ASN][1000 genomes]
rs5749169	0.80[ASN][1000 genomes]
rs5753318	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5753327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5753334	0.80[ASN][1000 genomes]
rs62235916	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31199400-31213000	Weak transcription	Fetal Heart	heart
2	chr22:31199800-31218000	Weak transcription	Gastric	stomach
3	chr22:31201600-31217000	Weak transcription	Brain Anterior Caudate	brain
4	chr22:31202800-31213200	Weak transcription	HSMMtube	muscle
5	chr22:31203000-31210000	Weak transcription	NHDF-Ad	bronchial
6	chr22:31203000-31217800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr22:31203600-31217800	Weak transcription	Brain Hippocampus Middle	brain
8	chr22:31204000-31213400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr22:31205600-31212400	Weak transcription	Right Atrium	heart
10	chr22:31205600-31217000	Weak transcription	Brain Angular Gyrus	brain
11	chr22:31206400-31217000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr22:31206600-31209600	Weak transcription	NHEK	skin
13	chr22:31206800-31218000	Weak transcription	HSMM	muscle
14	chr22:31207000-31210200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr22:31207000-31218000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr22:31207200-31213600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr22:31209000-31213200	Weak transcription	Hela-S3	cervix
18	chr22:31209000-31218000	Weak transcription	A549	lung

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