Variant report

Variant	rs136271
Chromosome Location	chr22:31196485-31196486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr22:31196481-31196531	GM06990	blood:	n/a
2	chr22:31196481-31196531	ovcar-3	ovarian:	n/a
3	chr22:31196481-31196531	HL-60	blood:	n/a
4	chr22:31196481-31196531	HCT-116	colon:	n/a
5	chr22:31196481-31196531	HRCEpiC	kidney:	n/a
6	chr22:31196481-31196531	HMEC	breast:	n/a
7	chr22:31196481-31196531	NHBE	bronchial:	n/a
8	chr22:31196481-31196531	MCF-7	breast:	n/a
9	chr22:31196481-31196531	HRPEpiC	eye:	n/a
10	chr22:31196481-31196531	SKMC	muscle:	n/a
11	chr22:31196481-31196531	AG04450	lung:	fetal
12	chr22:31196481-31196531	Jurkat	blood:	n/a
13	chr22:31196481-31196531	AG09309	skin:	n/a
14	chr22:31196481-31196531	A549	lung:	n/a
15	chr22:31196481-31196531	T-47D	breast:	n/a
16	chr22:31196481-31196531	GM12891	blood:	n/a
17	chr22:31196481-31196531	SK-N-SH_RA	brain:	n/a
18	chr22:31196481-31196531	NT2-D1	testis:	n/a
19	chr22:31196481-31196531	LNCaP	prostate:	n/a
20	chr22:31196481-31196531	SK-N-MC	brain:	n/a
21	chr22:31196481-31196531	HUVEC	blood vessel:	n/a
22	chr22:31196481-31196531	AG10803	skin:	n/a
23	chr22:31196481-31196531	PFSK-1	brain:	n/a
24	chr22:31196481-31196531	Hela-S3	cervix:	n/a
25	chr22:31196481-31196531	HRE	kidney:	n/a
26	chr22:31196481-31196531	HIPEpiC	eye:	n/a
27	chr22:31196481-31196531	HPAEpiC	pulmonary alveolar:	n/a
28	chr22:31196481-31196531	SK-N-SH	brain:	n/a
29	chr22:31196481-31196531	HEK293	kidney:	embryo
30	chr22:31196481-31196531	CMK	blood:	n/a
31	chr22:31196481-31196531	SAEC	small airway:	n/a
32	chr22:31196481-31196531	AG09319	gingival:	n/a
33	chr22:31196481-31196531	HCM	heart:	n/a
34	chr22:31196481-31196531	ProgFib	skin:	n/a
35	chr22:31196481-31196531	HCPEpiC	choroid plexus:	n/a
36	chr22:31196481-31196531	BJ	skin:	n/a
37	chr22:31196481-31196531	ECC-1	luminal epithelium:	n/a
38	chr22:31196481-31196531	NB4	blood:	n/a
39	chr22:31196481-31196531	HEEpiC	esophagus:	n/a
40	chr22:31196481-31196531	BE2_C	brain:	n/a
41	chr22:31196481-31196531	PrEC	prostate:	n/a
42	chr22:31196481-31196531	AG04449	skin:	fetal
43	chr22:31196481-31196531	GM19239	blood:	n/a
44	chr22:31196481-31196531	U87	brain:	n/a
45	chr22:31196481-31196531	HNPCEpiC	eye:	n/a
46	chr22:31196481-31196531	GM12878	blood:	n/a
47	chr22:31196481-31196531	HAEpiC	amniotic membrane:	n/a
48	chr22:31196481-31196531	HCF	heart:	n/a
49	chr22:31196481-31196531	MCF10A-Er-Src	breast:	n/a
50	chr22:31196481-31196531	RPTEC	kidney:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31192268..31194470-chr22:31196154..31198865,2	K562	blood:

No data

Variant related genes	Relation type
OSBP2	CpG island

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs136233	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs136238	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs136241	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136252	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136257	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs136260	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136261	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136266	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136268	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136269	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs136270	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136273	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136274	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136279	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136280	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs136281	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136283	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136284	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136286	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs136287	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136293	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136299	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs136300	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs136304	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs136308	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs136309	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28861993	0.99[ASN][1000 genomes]
rs5749166	0.98[ASN][1000 genomes]
rs5753318	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5753321	0.99[ASN][1000 genomes]
rs5753323	0.99[ASN][1000 genomes]
rs5753327	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62235914	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31173800-31198200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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