Variant report

Variant	rs62235914
Chromosome Location	chr22:31201034-31201035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31200754..31202579-chr22:31251210..31252775,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs136260	1.00[ASN][1000 genomes]
rs136261	1.00[ASN][1000 genomes]
rs136266	1.00[ASN][1000 genomes]
rs136268	1.00[ASN][1000 genomes]
rs136269	0.97[ASN][1000 genomes]
rs136270	1.00[ASN][1000 genomes]
rs136271	0.99[ASN][1000 genomes]
rs136273	1.00[ASN][1000 genomes]
rs136274	1.00[ASN][1000 genomes]
rs136279	1.00[ASN][1000 genomes]
rs136280	0.96[ASN][1000 genomes]
rs136281	1.00[ASN][1000 genomes]
rs136283	1.00[ASN][1000 genomes]
rs136284	1.00[ASN][1000 genomes]
rs136286	0.96[ASN][1000 genomes]
rs136287	1.00[ASN][1000 genomes]
rs136293	1.00[ASN][1000 genomes]
rs136299	0.93[ASN][1000 genomes]
rs136300	0.93[ASN][1000 genomes]
rs136304	0.93[ASN][1000 genomes]
rs136308	0.96[ASN][1000 genomes]
rs136309	0.93[ASN][1000 genomes]
rs28861993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5749166	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5749169	0.81[EUR][1000 genomes]
rs5753318	0.97[ASN][1000 genomes]
rs5753321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5753323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5753334	0.82[EUR][1000 genomes]
rs5997743	0.88[AFR][1000 genomes]
rs62235916	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31198000-31203400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:31199400-31201600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr22:31199400-31213000	Weak transcription	Fetal Heart	heart
4	chr22:31199600-31202000	Weak transcription	Lung	lung
5	chr22:31199600-31202200	Weak transcription	NH-A	brain
6	chr22:31199800-31201200	Weak transcription	Brain Hippocampus Middle	brain
7	chr22:31199800-31201400	Enhancers	HSMMtube	muscle
8	chr22:31199800-31203200	Enhancers	Brain Angular Gyrus	brain
9	chr22:31199800-31218000	Weak transcription	Gastric	stomach
10	chr22:31200000-31201200	Weak transcription	Brain Anterior Caudate	brain
11	chr22:31200000-31202400	Weak transcription	Brain Substantia Nigra	brain
12	chr22:31200200-31202200	Weak transcription	Spleen	Spleen
13	chr22:31200200-31203200	Flanking Active TSS	Hela-S3	cervix
14	chr22:31200400-31202400	Transcr. at gene 5' and 3'	NHEK	skin
15	chr22:31200400-31203000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr22:31200600-31201400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr22:31200600-31201800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr22:31200600-31201800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr22:31200600-31202000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr22:31200600-31202000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr22:31200600-31202200	Enhancers	HSMM	muscle
22	chr22:31200600-31203000	Enhancers	Brain Cingulate Gyrus	brain
23	chr22:31200600-31203200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr22:31200800-31201800	Weak transcription	A549	lung
25	chr22:31201000-31201400	Weak transcription	HMEC	breast
26	chr22:31201000-31202000	Weak transcription	NHDF-Ad	bronchial

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