Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13055067	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136232	0.80[ASN][1000 genomes]
rs136233	0.90[ASN][1000 genomes]
rs136238	0.98[ASN][1000 genomes]
rs136241	1.00[ASN][1000 genomes]
rs136252	1.00[ASN][1000 genomes]
rs136257	0.96[ASN][1000 genomes]
rs28861993	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs5749166	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs5749167	0.90[ASN][1000 genomes]
rs5749169	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5749171	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5749173	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5753321	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs5753323	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs5753327	0.89[ASN][1000 genomes]
rs5753334	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5753335	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5753336	0.94[EUR][1000 genomes]
rs5753337	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5753340	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5753341	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5753348	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57707485	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5997743	0.88[AFR][1000 genomes]
rs62235914	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62235942	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs742205	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31199400-31213000	Weak transcription	Fetal Heart	heart
2	chr22:31199800-31218000	Weak transcription	Gastric	stomach
3	chr22:31201600-31217000	Weak transcription	Brain Anterior Caudate	brain
4	chr22:31202800-31213200	Weak transcription	HSMMtube	muscle
5	chr22:31203000-31210000	Weak transcription	NHDF-Ad	bronchial
6	chr22:31203000-31217800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr22:31203600-31217800	Weak transcription	Brain Hippocampus Middle	brain
8	chr22:31204000-31213400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr22:31205600-31212400	Weak transcription	Right Atrium	heart
10	chr22:31205600-31217000	Weak transcription	Brain Angular Gyrus	brain
11	chr22:31206400-31217000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr22:31206600-31209600	Weak transcription	NHEK	skin
13	chr22:31206800-31218000	Weak transcription	HSMM	muscle
14	chr22:31207000-31210200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr22:31207000-31218000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr22:31207200-31208600	Weak transcription	Hela-S3	cervix
17	chr22:31207200-31213600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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