Variant report

Variant	rs136257
Chromosome Location	chr22:31204628-31204629
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31199000..31201831-chr22:31203593..31206253,2	K562	blood:

Variant related genes	Relation type
ENSG00000184792	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs136232	0.86[CHB][hapmap]
rs136233	0.89[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs136238	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs136241	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs136252	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs136260	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs136261	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs136266	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs136268	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs136269	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs136270	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs136271	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs136273	0.90[CEU][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs136274	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs136279	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs136280	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs136281	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs136283	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs136284	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs136286	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs136287	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs136293	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs136299	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs136300	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs136304	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs136308	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs136309	0.85[EUR][1000 genomes]
rs5749167	0.86[ASN][1000 genomes]
rs5753318	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5753327	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62235916	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31199400-31213000	Weak transcription	Fetal Heart	heart
2	chr22:31199800-31218000	Weak transcription	Gastric	stomach
3	chr22:31201600-31217000	Weak transcription	Brain Anterior Caudate	brain
4	chr22:31202800-31213200	Weak transcription	HSMMtube	muscle
5	chr22:31203000-31205000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:31203000-31210000	Weak transcription	NHDF-Ad	bronchial
7	chr22:31203000-31217800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr22:31203200-31205000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr22:31203200-31205000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr22:31203200-31205000	Weak transcription	Brain Angular Gyrus	brain
11	chr22:31203400-31204800	Weak transcription	HSMM	muscle
12	chr22:31203400-31205000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr22:31203600-31205000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr22:31203600-31205000	Weak transcription	HMEC	breast
15	chr22:31203600-31217800	Weak transcription	Brain Hippocampus Middle	brain
16	chr22:31203800-31205000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr22:31204000-31213400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr22:31204200-31207200	Strong transcription	Hela-S3	cervix
19	chr22:31204400-31204800	Strong transcription	NHEK	skin

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