Variant report

Variant	rs136309
Chromosome Location	chr22:31175525-31175526
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs136257	0.85[EUR][1000 genomes]
rs136260	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136261	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136266	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136268	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136269	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs136270	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136271	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs136273	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136274	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136279	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136280	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs136281	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136283	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136284	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136286	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs136287	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136293	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136299	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136300	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136304	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136308	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28861993	0.93[ASN][1000 genomes]
rs5749166	0.94[ASN][1000 genomes]
rs5753318	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5753321	0.93[ASN][1000 genomes]
rs5753323	0.93[ASN][1000 genomes]
rs62235914	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv2763260	chr22:31141521-31185000	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31140000-31185400	Weak transcription	Fetal Brain Female	brain
2	chr22:31160200-31177400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr22:31167600-31176000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr22:31168000-31185400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr22:31168600-31175600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr22:31168600-31175800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr22:31168600-31175800	Weak transcription	Right Atrium	heart
8	chr22:31172800-31189400	Weak transcription	Fetal Heart	heart
9	chr22:31173000-31176600	Weak transcription	Fetal Brain Male	brain
10	chr22:31173200-31175800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr22:31173800-31175800	Weak transcription	Brain Substantia Nigra	brain
12	chr22:31173800-31177400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr22:31173800-31177400	Weak transcription	Brain Angular Gyrus	brain
14	chr22:31173800-31181600	Weak transcription	Spleen	Spleen
15	chr22:31173800-31198200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr22:31174600-31175800	Weak transcription	HSMM	muscle
17	chr22:31174600-31176000	Weak transcription	Brain Anterior Caudate	brain
18	chr22:31174600-31177200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr22:31174600-31177200	Weak transcription	HSMMtube	muscle
20	chr22:31174600-31177400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr22:31174600-31179800	Weak transcription	Fetal Intestine Small	intestine
22	chr22:31174800-31175800	Weak transcription	Brain Hippocampus Middle	brain
23	chr22:31175200-31176600	Enhancers	Primary hematopoietic stem cells	blood
24	chr22:31175400-31175800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr22:31175400-31175800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr22:31175400-31176400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr22:31175400-31176400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links