Variant report
| Variant | rs28861993 |
|---|---|
| Chromosome Location | chr22:31193746-31193747 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:31192268..31194470-chr22:31196154..31198865,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs136260 | 1.00[ASN][1000 genomes] |
| rs136261 | 1.00[ASN][1000 genomes] |
| rs136266 | 1.00[ASN][1000 genomes] |
| rs136268 | 1.00[ASN][1000 genomes] |
| rs136269 | 0.97[ASN][1000 genomes] |
| rs136270 | 1.00[ASN][1000 genomes] |
| rs136271 | 0.99[ASN][1000 genomes] |
| rs136273 | 1.00[ASN][1000 genomes] |
| rs136274 | 1.00[ASN][1000 genomes] |
| rs136279 | 1.00[ASN][1000 genomes] |
| rs136280 | 0.96[ASN][1000 genomes] |
| rs136281 | 1.00[ASN][1000 genomes] |
| rs136283 | 1.00[ASN][1000 genomes] |
| rs136284 | 1.00[ASN][1000 genomes] |
| rs136286 | 0.96[ASN][1000 genomes] |
| rs136287 | 1.00[ASN][1000 genomes] |
| rs136293 | 1.00[ASN][1000 genomes] |
| rs136299 | 0.93[ASN][1000 genomes] |
| rs136300 | 0.93[ASN][1000 genomes] |
| rs136304 | 0.93[ASN][1000 genomes] |
| rs136308 | 0.96[ASN][1000 genomes] |
| rs136309 | 0.93[ASN][1000 genomes] |
| rs5749166 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs5749169 | 0.81[EUR][1000 genomes] |
| rs5753318 | 0.97[ASN][1000 genomes] |
| rs5753321 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5753323 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5753334 | 0.82[EUR][1000 genomes] |
| rs5997743 | 0.88[AFR][1000 genomes] |
| rs62235914 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62235916 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv915818 | chr22:30708245-31346302 | Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:31173800-31198200 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
