Variant report

Variant	rs136260
Chromosome Location	chr22:31200051-31200052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31197932..31200632-chr22:31277556..31279814,2	K562	blood:

Variant related genes	Relation type
ENSG00000184792	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs136233	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136238	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs136241	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136252	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136257	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs136261	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs136270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136271	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs136273	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136274	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136279	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136280	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs136281	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136283	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136284	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136286	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs136287	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136293	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136299	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136300	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136304	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136308	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs136309	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28861993	1.00[ASN][1000 genomes]
rs5749166	0.99[ASN][1000 genomes]
rs5753318	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5753321	1.00[ASN][1000 genomes]
rs5753323	1.00[ASN][1000 genomes]
rs5753327	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62235914	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31198000-31203400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:31198600-31200200	Active TSS	Hela-S3	cervix
3	chr22:31199000-31200400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
4	chr22:31199000-31200600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:31199200-31200400	Flanking Active TSS	NHEK	skin
6	chr22:31199200-31200600	Flanking Active TSS	HSMM	muscle
7	chr22:31199400-31200200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr22:31199400-31200200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr22:31199400-31201600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr22:31199400-31213000	Weak transcription	Fetal Heart	heart
11	chr22:31199600-31200600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr22:31199600-31202000	Weak transcription	Lung	lung
13	chr22:31199600-31202200	Weak transcription	NH-A	brain
14	chr22:31199800-31200200	Enhancers	Brain Cingulate Gyrus	brain
15	chr22:31199800-31200200	Bivalent/Poised TSS	Fetal Brain Female	brain
16	chr22:31199800-31200200	Enhancers	Spleen	Spleen
17	chr22:31199800-31200400	Bivalent Enhancer	Brain Germinal Matrix	brain
18	chr22:31199800-31200400	Weak transcription	NHDF-Ad	bronchial
19	chr22:31199800-31200600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr22:31199800-31200600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr22:31199800-31200600	Bivalent Enhancer	Fetal Brain Male	brain
22	chr22:31199800-31201000	Enhancers	HMEC	breast
23	chr22:31199800-31201200	Weak transcription	Brain Hippocampus Middle	brain
24	chr22:31199800-31201400	Enhancers	HSMMtube	muscle
25	chr22:31199800-31203200	Enhancers	Brain Angular Gyrus	brain
26	chr22:31199800-31218000	Weak transcription	Gastric	stomach
27	chr22:31200000-31200400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr22:31200000-31200400	Flanking Active TSS	A549	lung
29	chr22:31200000-31200600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr22:31200000-31201200	Weak transcription	Brain Anterior Caudate	brain
31	chr22:31200000-31202400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links