Variant report

Variant	rs136386
Chromosome Location	chr22:31110784-31110785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13053933	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13055490	0.80[EUR][1000 genomes]
rs136373	0.88[EUR][1000 genomes]
rs136376	0.88[EUR][1000 genomes]
rs136377	0.86[EUR][1000 genomes]
rs136378	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs136381	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs136382	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs136385	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs136390	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28360580	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34360174	0.80[EUR][1000 genomes]
rs34944552	0.80[EUR][1000 genomes]
rs34961431	0.80[EUR][1000 genomes]
rs35384996	0.82[EUR][1000 genomes]
rs35613453	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs136386	CTA-963H5.5	cis	Whole Blood	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31092200-31111000	Weak transcription	Fetal Intestine Small	intestine
2	chr22:31103000-31112800	Weak transcription	Brain Hippocampus Middle	brain
3	chr22:31103200-31112800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr22:31103200-31112800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr22:31108800-31113200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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