Variant report

Variant	rs34944552
Chromosome Location	chr22:31073500-31073501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13053933	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13055490	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13056984	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs136373	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs136376	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs136377	0.95[AMR][1000 genomes]
rs136378	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs136381	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs136382	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs136385	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs136386	0.80[EUR][1000 genomes]
rs136390	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28360580	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34360174	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34779325	0.99[EUR][1000 genomes]
rs34961431	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35137429	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35384996	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35613453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4820895	0.90[AMR][1000 genomes]
rs71331257	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs34944552	DUSP18	Cis_1M	lymphoblastoid	RTeQTL
rs34944552	CTA-963H5.5	cis	Whole Blood	GTEx
rs34944552	DUSP18	cis	Whole Blood	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31064800-31075400	Weak transcription	Brain Hippocampus Middle	brain
2	chr22:31071800-31074200	Weak transcription	Fetal Intestine Small	intestine
3	chr22:31072400-31075400	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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