Variant report

Variant	rs34961431
Chromosome Location	chr22:31076582-31076583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31070829..31073194-chr22:31076517..31078141,2	K562	blood:
2	chr22:31075909..31077591-chr22:31089407..31091958,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184792	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11912792	1.00[ASN][1000 genomes]
rs13053290	1.00[ASN][1000 genomes]
rs13053933	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13055490	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13055538	1.00[ASN][1000 genomes]
rs13056984	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433567	1.00[ASN][1000 genomes]
rs136373	0.81[EUR][1000 genomes]
rs136376	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs136377	0.84[AMR][1000 genomes]
rs136378	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136381	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136382	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136385	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136386	0.80[EUR][1000 genomes]
rs136390	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360580	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28672875	1.00[ASN][1000 genomes]
rs34360174	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34779325	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34944552	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35137429	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35384996	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35613453	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5994332	1.00[ASN][1000 genomes]
rs71331257	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7288635	1.00[ASN][1000 genomes]
rs7290980	1.00[ASN][1000 genomes]
rs9621096	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs34961431	DUSP18	cis	Whole Blood	GTEx
rs34961431	DUSP18	Cis_1M	lymphoblastoid	RTeQTL
rs34961431	CTA-963H5.5	cis	Whole Blood	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31074400-31078200	Enhancers	Brain Anterior Caudate	brain
2	chr22:31074600-31081400	Weak transcription	Fetal Intestine Small	intestine
3	chr22:31075000-31076800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr22:31075200-31077000	Enhancers	Brain Angular Gyrus	brain
5	chr22:31075400-31077200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr22:31075400-31077400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr22:31075400-31077600	Enhancers	Brain Hippocampus Middle	brain
8	chr22:31075400-31078000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr22:31075600-31076800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr22:31075600-31077000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr22:31075600-31077000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr22:31075800-31077000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr22:31075800-31077000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr22:31075800-31077200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr22:31075800-31077200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr22:31076000-31076800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr22:31076000-31077000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr22:31076000-31077000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr22:31076000-31077200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr22:31076000-31077800	Weak transcription	K562	blood
21	chr22:31076000-31078200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr22:31076200-31076600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr22:31076400-31077400	Enhancers	GM12878-XiMat	blood
24	chr22:31076400-31078400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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