Variant report

Variant	rs71331257
Chromosome Location	chr22:31066100-31066101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13053933	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13055490	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13056984	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs136376	0.87[AMR][1000 genomes]
rs136377	0.87[AMR][1000 genomes]
rs136381	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs136382	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs136385	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136390	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28360580	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34360174	0.95[EUR][1000 genomes]
rs34779325	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34944552	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34961431	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35137429	1.00[EUR][1000 genomes]
rs35384996	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35613453	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4820895	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs71331257	DUSP18	cis	Whole Blood	GTEx
rs71331257	CTA-963H5.5	cis	Whole Blood	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31064800-31066200	Weak transcription	Esophagus	oesophagus
2	chr22:31064800-31066800	Weak transcription	Right Atrium	heart
3	chr22:31064800-31068200	Weak transcription	HUVEC	blood vessel
4	chr22:31064800-31069200	Weak transcription	Spleen	Spleen
5	chr22:31064800-31070000	Weak transcription	K562	blood
6	chr22:31064800-31075400	Weak transcription	Brain Hippocampus Middle	brain
7	chr22:31065000-31068200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr22:31065000-31068400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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