Variant report

Variant	rs136390
Chromosome Location	chr22:31107851-31107852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11912792	1.00[ASN][1000 genomes]
rs13053290	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13053933	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13055490	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13055538	1.00[ASN][1000 genomes]
rs13056984	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433567	1.00[ASN][1000 genomes]
rs136354	1.00[YRI][hapmap]
rs136369	0.91[CEU][hapmap]
rs136370	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs136372	0.82[AMR][1000 genomes]
rs136373	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136376	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136377	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs136378	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136381	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136385	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136386	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28360580	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28672875	1.00[ASN][1000 genomes]
rs34360174	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34779325	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34944552	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34961431	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35137429	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35384996	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35613453	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4820895	0.88[AMR][1000 genomes]
rs5994332	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs71331257	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7288635	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7290980	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9621096	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs136390	CTA-963H5.5	cis	Whole Blood	GTEx
rs136390	DUSP18	cis	Whole Blood	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31092200-31111000	Weak transcription	Fetal Intestine Small	intestine
2	chr22:31101200-31108000	Weak transcription	Gastric	stomach
3	chr22:31103000-31108000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr22:31103000-31112800	Weak transcription	Brain Hippocampus Middle	brain
5	chr22:31103200-31112800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:31103200-31112800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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