Variant report

Variant	rs34779325
Chromosome Location	chr22:31064736-31064737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr22:31063384-31064812	A549	lung:	n/a	n/a
2	MXI1	chr22:31062965-31064960	SK-N-SH	brain:	n/a	n/a
3	MAX	chr22:31063451-31064774	MCF-7	breast:	n/a	n/a
4	ZNF263	chr22:31063561-31064837	HEK293-T-REx	kidney:	n/a	n/a
5	MAZ	chr22:31063087-31064935	IMR90	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:31030552..31033273-chr22:31061698..31065017,4	MCF-7	breast:
2	chr22:31030338..31033016-chr22:31062140..31065480,4	MCF-7	breast:
3	chr22:31063275..31065151-chr22:31126656..31129232,2	K562	blood:
4	chr22:31062803..31066328-chr22:31088733..31092098,4	MCF-7	breast:
5	chr22:31062708..31065866-chr22:31088934..31092028,6	MCF-7	breast:

No data

Variant related genes	Relation type
DUSP18	TF binding region
ENSG00000100036	Chromatin interaction
ENSG00000264661	Chromatin interaction
ENSG00000184792	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11912792	1.00[ASN][1000 genomes]
rs13053290	1.00[ASN][1000 genomes]
rs13053933	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13055490	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13055538	1.00[ASN][1000 genomes]
rs13056984	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433567	1.00[ASN][1000 genomes]
rs136378	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs136381	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136382	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136385	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136390	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360580	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28672875	1.00[ASN][1000 genomes]
rs34360174	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34944552	0.99[EUR][1000 genomes]
rs34961431	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35137429	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35384996	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35613453	0.99[EUR][1000 genomes]
rs5994332	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71331257	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7288635	1.00[ASN][1000 genomes]
rs7290980	1.00[ASN][1000 genomes]
rs9621096	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs34779325	CTA-963H5.5	cis	Whole Blood	GTEx
rs34779325	DUSP18	cis	Whole Blood	GTEx

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31062000-31064800	Active TSS	Brain Anterior Caudate	brain
2	chr22:31062800-31064800	Active TSS	NHLF	lung
3	chr22:31063000-31064800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr22:31063000-31065000	Active TSS	A549	lung
5	chr22:31063400-31065000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr22:31064000-31064800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr22:31064000-31064800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr22:31064000-31064800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr22:31064000-31064800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr22:31064000-31064800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr22:31064000-31064800	Flanking Bivalent TSS/Enh	HepG2	liver
12	chr22:31064000-31064800	Flanking Active TSS	HMEC	breast
13	chr22:31064000-31064800	Flanking Active TSS	NH-A	brain
14	chr22:31064200-31064800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr22:31064200-31064800	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr22:31064200-31064800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
17	chr22:31064200-31064800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr22:31064200-31064800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr22:31064200-31064800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
20	chr22:31064200-31064800	Flanking Active TSS	Fetal Intestine Small	intestine
21	chr22:31064200-31064800	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr22:31064200-31064800	Flanking Active TSS	NHEK	skin
23	chr22:31064200-31065000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr22:31064400-31064800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
25	chr22:31064400-31064800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr22:31064400-31064800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr22:31064400-31064800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr22:31064400-31064800	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr22:31064400-31064800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
30	chr22:31064400-31064800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
31	chr22:31064400-31064800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
32	chr22:31064400-31064800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr22:31064400-31064800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr22:31064400-31064800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr22:31064400-31064800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr22:31064400-31064800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr22:31064400-31064800	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr22:31064400-31064800	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr22:31064400-31064800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
40	chr22:31064400-31064800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr22:31064400-31064800	Enhancers	Esophagus	oesophagus
42	chr22:31064400-31064800	Enhancers	Fetal Brain Male	brain
43	chr22:31064400-31064800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
44	chr22:31064400-31064800	Enhancers	Lung	lung
45	chr22:31064400-31064800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr22:31064400-31064800	Flanking Active TSS	Rectal Smooth Muscle	rectum
47	chr22:31064400-31064800	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr22:31064400-31064800	Enhancers	Small Intestine	intestine
49	chr22:31064400-31064800	Flanking Active TSS	K562	blood
50	chr22:31064400-31064800	Flanking Active TSS	Osteobl	bone

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