Variant report

Variant	rs34360174
Chromosome Location	chr22:31085748-31085749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr22:31085558-31086054	HCT-116	colon:	n/a	n/a
2	USF1	chr22:31085605-31085896	H1-hESC	embryonic stem cell:	n/a	n/a
3	USF1	chr22:31085607-31085858	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
OSBP2	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11912792	1.00[ASN][1000 genomes]
rs13053290	1.00[ASN][1000 genomes]
rs13053933	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13055490	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13055538	1.00[ASN][1000 genomes]
rs13056984	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433567	1.00[ASN][1000 genomes]
rs136373	0.81[EUR][1000 genomes]
rs136376	0.81[EUR][1000 genomes]
rs136378	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136381	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136382	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136385	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136386	0.80[EUR][1000 genomes]
rs136390	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360580	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28672875	1.00[ASN][1000 genomes]
rs34779325	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34944552	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34961431	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35137429	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35384996	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35613453	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5994332	1.00[ASN][1000 genomes]
rs71331257	0.95[EUR][1000 genomes]
rs7288635	1.00[ASN][1000 genomes]
rs7290980	1.00[ASN][1000 genomes]
rs9621096	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs34360174	DUSP18	Cis_1M	lymphoblastoid	RTeQTL
rs34360174	CTA-963H5.5	cis	Whole Blood	GTEx
rs34360174	DUSP18	cis	Whole Blood	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31077400-31089800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr22:31077400-31090000	Weak transcription	Fetal Heart	heart
3	chr22:31077600-31090000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr22:31078200-31089200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:31085600-31085800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr22:31085600-31086000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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