Variant report
| Variant | rs1374857 |
|---|---|
| Chromosome Location | chr3:59667639-59667640 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10440118 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12635894 | 1.00[EUR][1000 genomes] |
| rs12715546 | 1.00[EUR][1000 genomes] |
| rs1374856 | 1.00[EUR][1000 genomes] |
| rs1385717 | 1.00[EUR][1000 genomes] |
| rs1666058 | 1.00[EUR][1000 genomes] |
| rs28611453 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28641069 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28700191 | 1.00[EUR][1000 genomes] |
| rs28735812 | 1.00[EUR][1000 genomes] |
| rs35342045 | 1.00[EUR][1000 genomes] |
| rs363798 | 1.00[EUR][1000 genomes] |
| rs57702122 | 1.00[EUR][1000 genomes] |
| rs72884744 | 1.00[EUR][1000 genomes] |
| rs72884777 | 1.00[EUR][1000 genomes] |
| rs7622127 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7649319 | 1.00[EUR][1000 genomes] |
| rs780343 | 1.00[EUR][1000 genomes] |
| rs9311718 | 1.00[EUR][1000 genomes] |
| rs9311719 | 1.00[EUR][1000 genomes] |
| rs9825740 | 1.00[EUR][1000 genomes] |
| rs9827430 | 1.00[EUR][1000 genomes] |
| rs9838214 | 1.00[EUR][1000 genomes] |
| rs9855365 | 1.00[EUR][1000 genomes] |
| rs9879404 | 1.00[EUR][1000 genomes] |
| rs9990327 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834706 | chr3:59538151-59736014 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers | Chromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv998711 | chr3:59542279-59704503 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014601 | chr3:59666609-59888166 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:59667200-59668200 | Weak transcription | Fetal Muscle Leg | muscle |
