Variant report

Variant	rs363798
Chromosome Location	chr3:59647052-59647053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10440118	1.00[EUR][1000 genomes]
rs12635894	1.00[EUR][1000 genomes]
rs12715546	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1374856	1.00[EUR][1000 genomes]
rs1374857	1.00[EUR][1000 genomes]
rs1385717	1.00[EUR][1000 genomes]
rs1666058	1.00[EUR][1000 genomes]
rs28611453	1.00[EUR][1000 genomes]
rs28641069	1.00[EUR][1000 genomes]
rs28700191	1.00[EUR][1000 genomes]
rs28735812	1.00[EUR][1000 genomes]
rs35342045	1.00[EUR][1000 genomes]
rs57702122	1.00[EUR][1000 genomes]
rs72884744	1.00[EUR][1000 genomes]
rs72884777	1.00[EUR][1000 genomes]
rs7622127	1.00[EUR][1000 genomes]
rs7649319	1.00[EUR][1000 genomes]
rs780343	1.00[EUR][1000 genomes]
rs9311718	1.00[EUR][1000 genomes]
rs9311719	1.00[EUR][1000 genomes]
rs9825740	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9827430	1.00[EUR][1000 genomes]
rs9835405	0.81[AMR][1000 genomes]
rs9838214	1.00[EUR][1000 genomes]
rs9855365	1.00[EUR][1000 genomes]
rs9879404	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9990327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv998711	chr3:59542279-59704503	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59640800-59650000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:59645200-59647600	Enhancers	Fetal Lung	lung
3	chr3:59645200-59648200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:59645400-59651200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:59645600-59647400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:59645600-59647400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr3:59645600-59647400	Enhancers	Stomach Mucosa	stomach
8	chr3:59645800-59647200	Weak transcription	Gastric	stomach
9	chr3:59645800-59647400	Enhancers	Osteobl	bone
10	chr3:59645800-59650400	Weak transcription	Aorta	Aorta
11	chr3:59646000-59647200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:59646000-59647400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr3:59646000-59647600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:59646000-59648000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:59646200-59647200	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr3:59646200-59648000	Enhancers	Small Intestine	intestine
17	chr3:59646400-59647400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:59646400-59650000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:59646600-59647200	Enhancers	Colon Smooth Muscle	Colon
20	chr3:59646600-59647400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr3:59646800-59647400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr3:59646800-59647400	Enhancers	Adipose Nuclei	Adipose
23	chr3:59646800-59647400	Enhancers	Fetal Muscle Leg	muscle
24	chr3:59646800-59647400	Enhancers	Fetal Stomach	stomach
25	chr3:59646800-59647400	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr3:59647000-59647200	Enhancers	Duodenum Mucosa	Duodenum
27	chr3:59647000-59647200	Enhancers	Fetal Muscle Trunk	muscle
28	chr3:59647000-59647200	Active TSS	A549	lung
29	chr3:59647000-59647400	Enhancers	Brain Germinal Matrix	brain
30	chr3:59647000-59647400	Enhancers	Esophagus	oesophagus
31	chr3:59647000-59647400	Enhancers	Fetal Intestine Large	intestine
32	chr3:59647000-59647800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr3:59647000-59648000	Enhancers	Lung	lung

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