Variant report

Variant	rs72884777
Chromosome Location	chr3:59739395-59739396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10440118	1.00[EUR][1000 genomes]
rs12635894	1.00[EUR][1000 genomes]
rs12715546	1.00[EUR][1000 genomes]
rs1374856	1.00[EUR][1000 genomes]
rs1374857	1.00[EUR][1000 genomes]
rs1385717	1.00[EUR][1000 genomes]
rs1666058	1.00[EUR][1000 genomes]
rs28611453	1.00[EUR][1000 genomes]
rs28641069	1.00[EUR][1000 genomes]
rs28700191	1.00[EUR][1000 genomes]
rs28735812	1.00[EUR][1000 genomes]
rs35342045	1.00[EUR][1000 genomes]
rs363798	1.00[EUR][1000 genomes]
rs55802039	1.00[EUR][1000 genomes]
rs56236202	1.00[EUR][1000 genomes]
rs57702122	1.00[EUR][1000 genomes]
rs58999901	1.00[EUR][1000 genomes]
rs72884744	1.00[EUR][1000 genomes]
rs73839552	1.00[EUR][1000 genomes]
rs73839553	1.00[EUR][1000 genomes]
rs73839556	1.00[EUR][1000 genomes]
rs73839560	1.00[EUR][1000 genomes]
rs73839561	1.00[EUR][1000 genomes]
rs73839564	1.00[EUR][1000 genomes]
rs73839599	1.00[EUR][1000 genomes]
rs73841803	1.00[EUR][1000 genomes]
rs73841806	1.00[EUR][1000 genomes]
rs73841807	1.00[EUR][1000 genomes]
rs7616048	1.00[EUR][1000 genomes]
rs7622127	1.00[EUR][1000 genomes]
rs7649319	1.00[EUR][1000 genomes]
rs780343	1.00[EUR][1000 genomes]
rs9311718	1.00[EUR][1000 genomes]
rs9311719	1.00[EUR][1000 genomes]
rs9825740	1.00[EUR][1000 genomes]
rs9827430	1.00[EUR][1000 genomes]
rs9838214	1.00[EUR][1000 genomes]
rs9855365	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9879404	1.00[EUR][1000 genomes]
rs9990327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59733200-59740200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:59734200-59739800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:59735400-59739800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:59735600-59739400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:59735600-59739800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:59735800-59742400	Weak transcription	Ovary	ovary
7	chr3:59736000-59739600	Weak transcription	NHDF-Ad	bronchial
8	chr3:59736400-59739600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:59736400-59739800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:59737200-59739400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:59737400-59740000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:59737600-59741600	Enhancers	Fetal Thymus	thymus
13	chr3:59738000-59739800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:59738000-59740200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:59738200-59747000	Enhancers	Primary T cells from cord blood	blood
16	chr3:59738400-59742200	Enhancers	Dnd41	blood
17	chr3:59738400-59749000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr3:59738400-59749200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:59738600-59740000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:59738600-59741000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr3:59738800-59740400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr3:59738800-59741600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr3:59739000-59747200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr3:59739200-59739600	Weak transcription	Thymus	Thymus

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