Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10440118	1.00[EUR][1000 genomes]
rs12635894	1.00[EUR][1000 genomes]
rs12715546	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1374856	1.00[EUR][1000 genomes]
rs1374857	1.00[EUR][1000 genomes]
rs1385717	1.00[EUR][1000 genomes]
rs1666058	1.00[EUR][1000 genomes]
rs28611453	1.00[EUR][1000 genomes]
rs28641069	1.00[EUR][1000 genomes]
rs28700191	1.00[EUR][1000 genomes]
rs28735812	1.00[EUR][1000 genomes]
rs363798	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57702122	1.00[EUR][1000 genomes]
rs72884744	1.00[EUR][1000 genomes]
rs72884777	1.00[EUR][1000 genomes]
rs7622127	1.00[EUR][1000 genomes]
rs9311718	1.00[EUR][1000 genomes]
rs9311719	1.00[EUR][1000 genomes]
rs9827430	1.00[EUR][1000 genomes]
rs9835405	0.81[AMR][1000 genomes]
rs9838214	1.00[EUR][1000 genomes]
rs9855365	1.00[EUR][1000 genomes]
rs9879404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9990327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv998711	chr3:59542279-59704503	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59587800-59595400	Weak transcription	Fetal Lung	lung
2	chr3:59592600-59595600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:59593200-59595400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:59593200-59595600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:59593600-59595600	Weak transcription	Right Atrium	heart
6	chr3:59593800-59595400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:59593800-59595400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:59593800-59595400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:59593800-59595400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:59594200-59595400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:59594400-59595400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:59594400-59595800	Weak transcription	Brain Germinal Matrix	brain

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