Variant report

Variant	rs28641069
Chromosome Location	chr3:59664395-59664396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10440118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12635894	1.00[EUR][1000 genomes]
rs12715546	1.00[EUR][1000 genomes]
rs1374856	1.00[EUR][1000 genomes]
rs1374857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1385717	1.00[EUR][1000 genomes]
rs1666058	1.00[EUR][1000 genomes]
rs28611453	1.00[EUR][1000 genomes]
rs28700191	1.00[EUR][1000 genomes]
rs28735812	1.00[EUR][1000 genomes]
rs35342045	1.00[EUR][1000 genomes]
rs363798	1.00[EUR][1000 genomes]
rs57702122	1.00[EUR][1000 genomes]
rs72884744	1.00[EUR][1000 genomes]
rs72884777	1.00[EUR][1000 genomes]
rs7622127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7649319	1.00[EUR][1000 genomes]
rs780343	1.00[EUR][1000 genomes]
rs9311718	1.00[EUR][1000 genomes]
rs9311719	1.00[EUR][1000 genomes]
rs9825740	1.00[EUR][1000 genomes]
rs9827430	1.00[EUR][1000 genomes]
rs9838214	1.00[EUR][1000 genomes]
rs9855365	1.00[EUR][1000 genomes]
rs9879404	1.00[EUR][1000 genomes]
rs9990327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv998711	chr3:59542279-59704503	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59663000-59665600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:59663200-59667200	Enhancers	Fetal Muscle Leg	muscle
3	chr3:59663400-59664600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:59663800-59664600	Enhancers	Stomach Mucosa	stomach
5	chr3:59664200-59664800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr3:59664200-59665200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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