Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11120449	0.98[ASN][1000 genomes]
rs472961	0.83[ASN][1000 genomes]
rs475341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs476910	0.83[ASN][1000 genomes]
rs477485	0.87[ASN][1000 genomes]
rs478664	0.83[ASN][1000 genomes]
rs486980	0.86[ASN][1000 genomes]
rs487527	0.85[ASN][1000 genomes]
rs497870	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs501475	0.94[ASN][1000 genomes]
rs506436	0.84[ASN][1000 genomes]
rs506765	0.94[ASN][1000 genomes]
rs512597	0.87[ASN][1000 genomes]
rs520982	0.94[ASN][1000 genomes]
rs527388	0.94[ASN][1000 genomes]
rs530931	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs534411	0.94[ASN][1000 genomes]
rs542158	0.86[ASN][1000 genomes]
rs549523	0.85[ASN][1000 genomes]
rs554343	0.87[ASN][1000 genomes]
rs556648	0.85[ASN][1000 genomes]
rs558728	0.84[ASN][1000 genomes]
rs559944	0.94[ASN][1000 genomes]
rs561766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs562935	0.94[ASN][1000 genomes]
rs566170	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs6658958	0.89[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs6684902	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6690944	0.98[ASN][1000 genomes]
rs896652	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1377185	C1orf227	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215113400-215130000	Weak transcription	NHDF-Ad	bronchial
2	chr1:215116000-215121200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:215120000-215120400	Enhancers	NHLF	lung
4	chr1:215120000-215120600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:215120200-215120400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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