Variant report

Variant	rs501475
Chromosome Location	chr1:215112517-215112518
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr1:215112269-215112642	K562	blood:	n/a	n/a
2	EP300	chr1:215112187-215112774	K562	blood:	n/a	n/a
3	TAL1	chr1:215112301-215112883	K562	blood:	n/a	chr1:215112338-215112353 chr1:215112341-215112350
4	TEAD4	chr1:215112493-215112928	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000223869	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11120449	0.96[ASN][1000 genomes]
rs1377185	0.94[ASN][1000 genomes]
rs472961	0.88[ASN][1000 genomes]
rs475341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476910	0.88[ASN][1000 genomes]
rs477485	0.92[ASN][1000 genomes]
rs478664	0.88[ASN][1000 genomes]
rs486980	0.90[ASN][1000 genomes]
rs487527	0.89[ASN][1000 genomes]
rs506436	0.89[ASN][1000 genomes]
rs506765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512597	0.92[ASN][1000 genomes]
rs520982	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527388	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534411	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542158	0.90[ASN][1000 genomes]
rs549523	0.89[ASN][1000 genomes]
rs554343	0.92[ASN][1000 genomes]
rs556648	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs558728	0.89[ASN][1000 genomes]
rs558879	0.84[ASN][1000 genomes]
rs559944	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566170	0.90[ASN][1000 genomes]
rs6658958	0.86[ASN][1000 genomes]
rs6684902	0.96[ASN][1000 genomes]
rs6690944	0.96[ASN][1000 genomes]
rs896652	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215112400-215112800	Enhancers	K562	blood

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