Variant report
| Variant | rs11120449 |
|---|---|
| Chromosome Location | chr1:215106893-215106894 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:215094543..215096510-chr1:215106179..215108957,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11120450 | 0.97[AFR][1000 genomes] |
| rs1377185 | 0.98[ASN][1000 genomes] |
| rs17042163 | 0.90[AFR][1000 genomes] |
| rs472961 | 0.85[ASN][1000 genomes] |
| rs475341 | 0.96[ASN][1000 genomes] |
| rs476910 | 0.85[ASN][1000 genomes] |
| rs477485 | 0.88[ASN][1000 genomes] |
| rs478664 | 0.85[ASN][1000 genomes] |
| rs486980 | 0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs487527 | 0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs501475 | 0.96[ASN][1000 genomes] |
| rs506436 | 0.86[ASN][1000 genomes] |
| rs506765 | 0.96[ASN][1000 genomes] |
| rs512597 | 0.88[ASN][1000 genomes] |
| rs520982 | 0.96[ASN][1000 genomes] |
| rs527388 | 0.96[ASN][1000 genomes] |
| rs534411 | 0.96[ASN][1000 genomes] |
| rs542158 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs549523 | 0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs554343 | 0.88[ASN][1000 genomes] |
| rs556648 | 0.85[ASN][1000 genomes] |
| rs558728 | 0.86[ASN][1000 genomes] |
| rs558879 | 0.80[ASN][1000 genomes] |
| rs559944 | 0.96[ASN][1000 genomes] |
| rs561766 | 0.96[ASN][1000 genomes] |
| rs562935 | 0.96[ASN][1000 genomes] |
| rs566170 | 0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6658958 | 0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6684902 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6690944 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72743806 | 0.84[AFR][1000 genomes] |
| rs896652 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873167 | chr1:214950361-215116947 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:215106600-215107000 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 2 | chr1:215106800-215107400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
