Variant report

Variant	rs6684902
Chromosome Location	chr1:215113661-215113662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11120449	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377185	0.98[ASN][1000 genomes]
rs17042163	0.84[GIH][hapmap]
rs472961	0.85[ASN][1000 genomes]
rs475341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs476910	0.85[ASN][1000 genomes]
rs477485	0.88[ASN][1000 genomes]
rs478664	0.85[ASN][1000 genomes]
rs486980	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs487527	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs497870	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs501475	0.96[ASN][1000 genomes]
rs506436	0.86[ASN][1000 genomes]
rs506765	0.96[ASN][1000 genomes]
rs512597	0.88[ASN][1000 genomes]
rs520982	0.96[ASN][1000 genomes]
rs527388	0.96[ASN][1000 genomes]
rs530931	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs534411	0.96[ASN][1000 genomes]
rs542158	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs549523	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs554343	0.88[ASN][1000 genomes]
rs556648	0.85[ASN][1000 genomes]
rs558728	0.86[ASN][1000 genomes]
rs558879	0.80[ASN][1000 genomes]
rs559944	0.96[ASN][1000 genomes]
rs561766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs562935	0.96[ASN][1000 genomes]
rs566170	0.87[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6658958	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6690944	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527056	0.84[GIH][hapmap]
rs896652	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215112800-215116600	Weak transcription	K562	blood
2	chr1:215113400-215130000	Weak transcription	NHDF-Ad	bronchial

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