Variant report
| Variant | rs1394318 |
|---|---|
| Chromosome Location | chr13:61483833-61483834 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs1067969 | 1.00[ASN][1000 genomes] |
| rs1068735 | 1.00[ASN][1000 genomes] |
| rs12428173 | 1.00[ASN][1000 genomes] |
| rs1606637 | 1.00[ASN][1000 genomes] |
| rs17059106 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17059118 | 0.86[ASN][1000 genomes] |
| rs1847506 | 1.00[ASN][1000 genomes] |
| rs1849688 | 1.00[ASN][1000 genomes] |
| rs186181 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs186182 | 1.00[ASN][1000 genomes] |
| rs1875849 | 0.86[ASN][1000 genomes] |
| rs2655710 | 1.00[ASN][1000 genomes] |
| rs2671284 | 1.00[ASN][1000 genomes] |
| rs2770917 | 1.00[ASN][1000 genomes] |
| rs300324 | 1.00[ASN][1000 genomes] |
| rs301634 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs301686 | 1.00[ASN][1000 genomes] |
| rs301693 | 1.00[ASN][1000 genomes] |
| rs3119874 | 0.86[ASN][1000 genomes] |
| rs3119876 | 1.00[ASN][1000 genomes] |
| rs3127055 | 1.00[ASN][1000 genomes] |
| rs3850087 | 1.00[ASN][1000 genomes] |
| rs3861175 | 1.00[ASN][1000 genomes] |
| rs3914416 | 1.00[ASN][1000 genomes] |
| rs3914417 | 1.00[ASN][1000 genomes] |
| rs4542547 | 1.00[ASN][1000 genomes] |
| rs4886290 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7997129 | 1.00[ASN][1000 genomes] |
| rs7998134 | 1.00[ASN][1000 genomes] |
| rs9563846 | 1.00[ASN][1000 genomes] |
| rs9570380 | 1.00[ASN][1000 genomes] |
| rs9570382 | 0.87[ASN][1000 genomes] |
| rs9598176 | 1.00[ASN][1000 genomes] |
| rs9598193 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9598199 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9598206 | 0.86[ASN][1000 genomes] |
| rs997706 | 0.87[ASN][1000 genomes] |
| rs997707 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832624 | chr13:61383648-61553974 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61482200-61485000 | Weak transcription | Dnd41 | blood |
