Variant report

Variant	rs301634
Chromosome Location	chr13:61456281-61456282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1067969	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1067970	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1068735	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428173	1.00[ASN][1000 genomes]
rs1394318	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606637	1.00[ASN][1000 genomes]
rs17059106	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059118	0.86[ASN][1000 genomes]
rs1847506	1.00[ASN][1000 genomes]
rs1849688	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186181	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186182	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875849	0.86[ASN][1000 genomes]
rs2655710	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2671284	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2671285	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2770917	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300324	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs301686	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs301693	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119874	0.86[ASN][1000 genomes]
rs3119876	1.00[ASN][1000 genomes]
rs3127055	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850087	1.00[ASN][1000 genomes]
rs3861175	1.00[ASN][1000 genomes]
rs3914416	1.00[ASN][1000 genomes]
rs3914417	1.00[ASN][1000 genomes]
rs4542547	1.00[ASN][1000 genomes]
rs4886290	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7997129	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998134	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563846	1.00[ASN][1000 genomes]
rs9570380	1.00[ASN][1000 genomes]
rs9570382	0.87[ASN][1000 genomes]
rs9598176	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598193	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598199	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598206	0.86[ASN][1000 genomes]
rs997706	0.87[ASN][1000 genomes]
rs997707	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61451000-61459000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61454600-61456400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr13:61455200-61456600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:61455400-61456400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:61455400-61456400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:61455600-61456400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:61455600-61456600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:61455800-61456400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:61456000-61456400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:61456000-61456400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr13:61456000-61456600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:61456000-61456600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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