Variant report

Variant	rs3850087
Chromosome Location	chr13:61419581-61419582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1067969	1.00[ASN][1000 genomes]
rs1068735	1.00[ASN][1000 genomes]
rs12428173	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394318	1.00[ASN][1000 genomes]
rs1606637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059106	1.00[ASN][1000 genomes]
rs17059118	0.86[ASN][1000 genomes]
rs1847506	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849688	1.00[ASN][1000 genomes]
rs186181	1.00[ASN][1000 genomes]
rs186182	1.00[ASN][1000 genomes]
rs1875849	0.86[ASN][1000 genomes]
rs2655710	1.00[ASN][1000 genomes]
rs2671284	1.00[ASN][1000 genomes]
rs2770917	1.00[ASN][1000 genomes]
rs300324	1.00[ASN][1000 genomes]
rs301634	1.00[ASN][1000 genomes]
rs301686	1.00[ASN][1000 genomes]
rs301693	1.00[ASN][1000 genomes]
rs3119874	0.86[ASN][1000 genomes]
rs3119876	1.00[ASN][1000 genomes]
rs3127055	1.00[ASN][1000 genomes]
rs3861175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3914416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3914417	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542547	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886290	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7997129	1.00[ASN][1000 genomes]
rs7998134	1.00[ASN][1000 genomes]
rs9563846	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570380	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570382	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9598176	1.00[ASN][1000 genomes]
rs9598193	1.00[ASN][1000 genomes]
rs9598199	1.00[ASN][1000 genomes]
rs9598206	0.86[ASN][1000 genomes]
rs997706	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs997707	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61418800-61420200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:61419400-61420200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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